Parus major (Great Tit): 107206210 Help Entry 107206210         CDS       T04864                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism pmaj  Parus major (Great Tit) Pathway pmaj04010   MAPK signaling pathway pmaj04120   Ubiquitin mediated proteolysis pmaj04140   Autophagy - animal pmaj04144   Endocytosis pmaj04620   Toll-like receptor signaling pathway pmaj04621   NOD-like receptor signaling pathway pmaj04622   RIG-I-like receptor signaling pathway pmaj05132   Salmonella infection pmaj05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:pmaj00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     107206210 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     107206210 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     107206210 (TRAF6)    04140 Autophagy - animal     107206210 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     107206210 (TRAF6)    04621 NOD-like receptor signaling pathway     107206210 (TRAF6)    04622 RIG-I-like receptor signaling pathway     107206210 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     107206210 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     107206210 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pmaj04131]     107206210 (TRAF6)    04121 Ubiquitin system [BR:pmaj04121]     107206210 (TRAF6) Enzymes [BR:pmaj01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      107206210 (TRAF6) Membrane trafficking [BR:pmaj04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     107206210 (TRAF6) Ubiquitin system [BR:pmaj04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     107206210 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX PspA_IM30 Sina_ZnF RING_XB3-XBAT31 TRAF3_RING Med21 CENP-F_leu_zip zf-RING_11 DUF4455 CEP104_ZnF DUF16 ATG16 U-box TMF_TATA_bd HAP1_N Spc29 DUF1664 PUMA_CC AAA_13 UPF0242 HMMR_N DM DUF7607 Cortex-I_coil Motif Other DBs NCBI-GeneID:  107206210 NCBI-ProteinID:  XP_015487314 Ensembl:  ENSPMJG00000010023 LinkDB All DBs Position 5:complement(18973544..18995181) Genome browser AA seq 541 aa AA seqDB search MSLLHSDSSCGAGDSGCCAAMASACSAAAKEESSSVGSGNQPASFTEETQGYDVEFDPPL ESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPDNFAK REILSLMVKCPNKGCSMKMELRHLEDHQLQCDFSTVECPQCQGTFPKNHLKEHMTQECPR RQVCCPNCATSMAYEDKELHDQTCPLANVYCEYCNTVLIREQMPNHYDNDCPTAPVPCFY SAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTAANPVPFINGLPFEPALFSHV SHAAYDCNTEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNAHVAELKRTIRNLEGKI TEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQLPNAQ RCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELLAFQR PTIHRNPKGFGYVTFMHLENLKQRTFIKDDTLLVRCEVLTRLDLNSVRREGFQARSTDGA M NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt atgagcctgctgcacagtgacagcagctgtggagccggggacagcggctgctgtgcagcc atggccagcgcctgcagcgccgcagccaaggaggagagctccagcgtcggcagcggcaac cagcccgcctcgttcacggaggaaacgcagggatacgacgtggagttcgatccgcccctg gaaagtaaatatgagtgtcccatctgtttgatggctctccgggaggcggtgcagacaccg tgcggccaccgtttctgcaaaggctgcattgtcaaatcaataagagatgcaggtcacaaa tgtcctgtagacaatgaaattctgcttgaaaatcaactttttcctgacaactttgctaaa cgagaaatcctttcattaatggtcaagtgtcccaacaagggctgcagcatgaagatggag ctcaggcacttagaggaccaccagctgcagtgtgacttttccactgtggaatgcccacag tgccaaggaaccttccccaaaaaccatctgaaggagcacatgacccaagagtgtccgagg cgtcaagtgtgttgcccaaactgtgccacatccatggcctacgaagataaagagcttcat gaccaaacgtgcccacttgccaatgtatattgcgaatattgcaacacagtgctcatcaga gagcagatgcctaaccattatgacaatgattgtcctactgccccagtgccatgtttttac agtgcctttgggtgtcctgaaaagatgcaaaggaatgaactggctcgacatatgcaggag ttcactcaggttcacatgaggatgatggctcagagttttcagaatatcagtgttactgct gcaaatcctgtacccttcatcaatggcctaccctttgagcctgccctcttctcacacgtg tcacatgctgcatatgactgcaatacagaagttgaaaacttcaaagaaactattcagcag ttggaaggtcgtctggtaagacaagatcaccaaatcagggaactcattgctaaaatggag actcaaaatgctcacgtggcagaactcaaacgtactatccgaaatttggagggaaagatt actgaaatggaggcacagcaatgtaatggtatttatatctggaagattgagaacttcagt ggactgcagaaagcccaggaagaagagagacctgtagtgatgcacagtcctggcttctac acagggaagcctggctacaagctgtgcttgcgcctgcatatccagttaccaaacgctcag cgctgcgctaattttatctctctgtttgtccacactatgcaaggggaatatgacagccac ctgccctggccgttccaaggcaccatacgactttctattttggatcaatcagaaggccca gaaaggcagaaccatgaagaggtgatggaagccaagccagagctactggccttccagaga ccgacaattcaccgcaatcctaaaggttttggttatgtgactttcatgcacctggagaac ttgaaacagagaaccttcatcaaggacgacacgctcctggtgcgctgcgaggttctaacg cgcctggacttgaacagtgtccgcagagaagggttccaggcccgcagtactgatggagcc atgtag

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