Parus major (Great Tit): 107210338
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Entry
107210338 CDS
T04864
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X1
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03018
RNA degradation
pmaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107210338 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
107210338 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107210338 (LSM3)
03041 Spliceosome [BR:
pmaj03041
]
107210338 (LSM3)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107210338 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
107210338 (LSM3)
Spliceosome [BR:
pmaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107210338 (LSM3)
Complex C
U2 snRNP components
107210338 (LSM3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
107210338
NCBI-ProteinID:
XP_015496543
Ensembl:
ENSPMJG00000013238
LinkDB
All DBs
Position
12:10648244..10651170
Genome browser
AA seq
134 aa
AA seq
DB search
MVRVERDRILKINQFQSPCVKNDLLRTKLKFFDLRCLGLQQTTNTVEEPLDLIRLSLDER
IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR
GDGVVLVAPPLRVG
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atggttcgtgttgaaagggaccggatcctaaagatcaaccagttccaatccccctgtgtg
aagaatgatttgctgcggactaaactcaaattttttgacttacgttgcttagggctgcaa
caaacaacaaatactgtagaggagccacttgatctcatcagactcagtctagatgagcga
atctatgtcaaaatgaggaatgacagagagcttagaggcagattacatgcatatgaccag
cacttaaatatgattttgggtgatgtggaagaaactgtgactacaatagagattgatgaa
gaaacctatgaagagatttataaatctaccaaaaggaatattccaatgctctttgtcaga
ggggatggcgttgtgcttgtagctccccccttgagggttggttga
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