Parus major (Great Tit): 107211564
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Entry
107211564 CDS
T04864
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107211564 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmaj03000
]
107211564 (KDM2B)
04121 Ubiquitin system [BR:
pmaj04121
]
107211564 (KDM2B)
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107211564 (KDM2B)
Enzymes [BR:
pmaj01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
107211564 (KDM2B)
Transcription factors [BR:
pmaj03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
107211564 (KDM2B)
Ubiquitin system [BR:
pmaj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107211564 (KDM2B)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
107211564 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
107211564 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
107211564
NCBI-ProteinID:
XP_015499188
Ensembl:
ENSPMJG00000003605
LinkDB
All DBs
Position
15:complement(2803078..2909078)
Genome browser
AA seq
1256 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEK
SQEPTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMER
HVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKR
LWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCS
WIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELRL
AGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNK
VTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaaggaggtacgatgagaacgaggacctctcggacgtggaggaaatcgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtt
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacaca
cagagaggagtggagatgagcatgtctcagtttgtgagatactatgaaaccccagaggcc
cagcgggagaagctctacaacgtcatcagcctggagttcagtcacaccaagctggagaac
attgtcaagcgccccaacgtggtggacttagtcgactgggtggataatatgtggccacag
cacttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtaaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcagagtgat
atctttctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggatacacgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccggtatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggaggctgcagggaggaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagtgtaaaatcaacgacccctacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagacccgcaggctctcctggaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcgggcggcccaaggggaagctgggcgct
gcctctgcggtgaagctcgcggccaaccggagcacggcgggcgcgcggcggcggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggagagtgccacttctgcaag
gacatgaagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atagctccggtgctgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgttgctg
aaggagcagaaaattaacagagacaacaaggaagtgccagatgctgccaaaaggaaaggg
gactgcgaggagactcccaggcggaaatcggaagaacattccaaaaaggctccagttgac
tcaatcctgaggagaaaatctgacgaggtgcatctgtggagaaaacggaaattcgagaaa
tcccaggaacccacgatgagaaagcggcggcgatcgtggaaggccccggatgaccgaact
gccatgatcaaacccctgcggcgcctcaagcaggagcccgaggatgagctgccagaagca
ccccccaggtccaaggatagcgaccagtctcgctccagctcgcccacagccgggcccagc
acggagggtgccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggctt
cccaataaggaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaacc
gagaacagccttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaac
gaggaacccaagcgtgcgttgaacaacagcgagagactccataggttcagcaaagggttg
aacgggactccccgggagctgaggcaccaccagctcatgcccagcctgcgcagcaccccc
cggggaatagcccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcgg
cacgttatccggccacctcccatcagcccccctccggactcgctccccctggatgacggg
gcagcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcataga
gacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaaga
ttatggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggc
attattaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcag
ctgagttggcttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctca
tggatagcagtgtcggcactttgtagctccagttgtcccttgctgcgaactctggacgtg
cagtgggcagaaggactgaaagacgcacaaatgagagacctcctgtccccgcccacggac
aaccggccaggccagatcgacaaccggagcaagctacggaacatcgtggagctgcgcctg
gccgggctggatatcacggatgcttcgctgcggctgatcatcaggcacatgcccctgctc
tccaaactcaatctcagttactgtaaccacgtgacagatcagtctattaacctgctgacc
gccgtcggaaccaccacgcgggattcgttaacagaaattaatttatcagactgcaataag
gtcactgaccagtgcctgtcctacttcaaacgttgtgggaacatctgccagatcgacctg
aggtactgcaagcaggtgacgaaggagggctgtgagcagttcatagcggagatgtccgta
agtgtccagtttgggcaggtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
