KEGG   PATHWAY: ppad03030
Entry
ppad03030                   Pathway                                
Name
DNA replication - Panthera pardus (leopard)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ppad03030  DNA replication
ppad03030

Organism
Panthera pardus (leopard) [GN:ppad]
Gene
109246180  RFC1; replication factor C subunit 1 [KO:K10754]
109246556  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
109246723  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
109246751  RNASEH2C; ribonuclease H2 subunit C isoform X1 [KO:K10745]
109246836  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
109249363  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
109249679  [KO:K03111]
109250616  RFC2; replication factor C subunit 2 [KO:K10755]
109251264  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
109252882  LIG1; LOW QUALITY PROTEIN: DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
109254033  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
109254737  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
109255140  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
109256037  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
109256815  RPA2; replication protein A 32 kDa subunit [KO:K10739]
109260677  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
109263408  POLE4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
109263738  RPA3; replication protein A 14 kDa subunit [KO:K10740]
109264332  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
109265495  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
109265980  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
109266053  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
109267190  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
109267913  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
109268516  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
109269126  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
109269214  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
109269945  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
109270349  PRIM1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
109270350  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
109271744  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
109271794  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
109274742  PCNA; proliferating cell nuclear antigen [KO:K04802]
109275276  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
109277567  RFC5; replication factor C subunit 5 [KO:K10756]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system