KEGG   PATHWAY: pret03050
Entry
pret03050                   Pathway                                
Name
Proteasome - Poecilia reticulata (guppy)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pret03050  Proteasome
pret03050

Other DBs
GO: 0000502
Organism
Poecilia reticulata (guppy) [GN:pret]
Gene
103456712  psme2; proteasome activator complex subunit 2 [KO:K06697]
103457804  [KO:K02730] [EC:3.4.25.1]
103457809  psmc1; 26S protease regulatory subunit 4 [KO:K03062]
103457995  psmc6; 26S protease regulatory subunit 10B [KO:K03064]
103458254  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
103458780  psma6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
103459593  psmc2; 26S protease regulatory subunit 7 [KO:K03061]
103460366  psmf1; proteasome inhibitor PI31 subunit isoform X1 [KO:K06700]
103460825  [KO:K02738] [EC:3.4.25.1]
103460923  [KO:K02741] [EC:3.4.25.1]
103460924  [KO:K02738] [EC:3.4.25.1]
103460925  [KO:K02739] [EC:3.4.25.1]
103460926  [KO:K02740] [EC:3.4.25.1]
103461217  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
103461924  adrm1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
103462007  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
103462149  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
103462812  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
103462813  psmc3; 26S protease regulatory subunit 6A [KO:K03065]
103463033  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
103463476  psmd1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
103463873  [KO:K11598] [EC:3.4.25.1]
103464891  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
103465036  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
103465756  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
103466053  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
103467746  [KO:K06691]
103468289  [KO:K03036]
103469005  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
103470248  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
103470875  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
103472544  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
103472718  [KO:K03029]
103472925  [KO:K02740] [EC:3.4.25.1]
103472926  [KO:K02738] [EC:3.4.25.1]
103472927  [KO:K02739] [EC:3.4.25.1]
103472928  [KO:K02741] [EC:3.4.25.1]
103473082  psmb2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
103473115  psmb7; proteasome subunit beta type-7 isoform X2 [KO:K02739] [EC:3.4.25.1]
103473123  [KO:K02739] [EC:3.4.25.1]
103474855  [KO:K02730] [EC:3.4.25.1]
103474918  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
103475063  psmd8; 26S proteasome non-ATPase regulatory subunit 8 isoform X1 [KO:K03031]
103477038  psme4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
103477520  psmc4; 26S protease regulatory subunit 6B [KO:K03063]
103478144  [KO:K03029]
103478293  psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
103478893  [KO:K11598] [EC:3.4.25.1]
103478894  [KO:K02737] [EC:3.4.25.1]
103479568  [KO:K02731] [EC:3.4.25.1]
103481340  psmc5; 26S protease regulatory subunit 8 [KO:K03066]
103481555  [KO:K06699]
103481695  psme3; proteasome activator complex subunit 3 [KO:K06698]
103481710  [KO:K03036]
103482306  pomp; proteasome maturation protein [KO:K11599]
103482319  psme1; proteasome activator complex subunit 1 [KO:K06696]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
pret04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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