KEGG   PATHWAY: pret04120
Entry
pret04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Poecilia reticulata (guppy)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pret04120  Ubiquitin mediated proteolysis
pret04120

Other DBs
GO: 0016567
Organism
Poecilia reticulata (guppy) [GN:pret]
Gene
103456677  ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103456896  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
103457010  cul1; cullin-1 [KO:K03347]
103457974  fbxw7; F-box/WD repeat-containing protein 7 isoform X3 [KO:K10260]
103457986  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
103458199  ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
103458467  [KO:K10456]
103459095  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
103459105  [KO:K08285] [EC:2.3.2.27]
103459412  ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
103459783  [KO:K10573] [EC:2.3.2.23]
103459979  skp1; S-phase kinase-associated protein 1 [KO:K03094]
103459982  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
103460128  herc1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
103460176  ube2l3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
103460179  [KO:K16063] [EC:2.3.2.-]
103460261  ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
103460352  ube2c; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
103460432  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
103460661  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
103461355  [KO:K04696]
103461777  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
103461975  cul4a; cullin-4A [KO:K10609]
103462108  [KO:K04706] [EC:2.3.2.-]
103462529  nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
103462696  [KO:K10582] [EC:2.3.2.23]
103462703  ddb1; DNA damage-binding protein 1 [KO:K10610]
103462724  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103462961  [KO:K04694]
103463337  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
103463438  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
103463544  [KO:K02207] [EC:2.3.2.23]
103463648  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
103463857  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
103463914  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
103463922  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
103464541  [KO:K03178] [EC:6.2.1.45]
103464828  [KO:K05632] [EC:2.3.2.26]
103464921  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
103464997  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
103465053  [KO:K10686] [EC:6.2.1.64]
103465255  [KO:K03871]
103465417  [KO:K10099]
103466080  [KO:K10576] [EC:2.3.2.23]
103466094  [KO:K10580] [EC:2.3.2.23]
103466235  [KO:K10614] [EC:2.3.2.26]
103466236  [KO:K10614] [EC:2.3.2.26]
103466297  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
103466428  [KO:K10582] [EC:2.3.2.23]
103466527  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
103466533  [KO:K04706] [EC:2.3.2.-]
103466631  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
103466713  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103466759  siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
103466827  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
103466870  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
103467052  itch; E3 ubiquitin-protein ligase Itchy homolog isoform X2 [KO:K05632] [EC:2.3.2.26]
103467217  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
103467330  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
103467495  birc7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
103467665  [KO:K10686] [EC:6.2.1.64]
103467931  [KO:K03178] [EC:6.2.1.45]
103468218  ube2z; ubiquitin-conjugating enzyme E2 Z isoform X1 [KO:K10585] [EC:2.3.2.23]
103468321  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
103468459  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
103468478  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
103468487  [KO:K10577]
103468522  [KO:K04678] [EC:2.3.2.26]
103468587  socs1; suppressor of cytokine signaling 1 [KO:K04694]
103468704  mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
103468942  [KO:K03873]
103469031  cdc27; cell division cycle protein 27 homolog isoform X2 [KO:K03350]
103469463  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
103469522  [KO:K10575] [EC:2.3.2.23]
103469523  anapc7; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7 [KO:K03354]
103469664  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
103469686  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
103469774  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
103469877  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
103470122  ubox5; RING finger protein 37 [KO:K10600] [EC:2.3.2.27]
103470142  fbxo4; F-box only protein 4 [KO:K10291]
103470168  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
103470342  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
103470451  [KO:K07868]
103470504  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
103470542  [KO:K06689] [EC:2.3.2.23]
103470720  ppil2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
103470906  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
103471027  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
103471033  syvn1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
103471054  [KO:K06689] [EC:2.3.2.23]
103471300  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
103471315  [KO:K04649] [EC:2.3.2.23]
103471323  fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
103471539  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
103471554  cul4b; cullin-4B [KO:K10609]
103471799  [KO:K06689] [EC:2.3.2.23]
103471952  smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
103471960  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
103471961  [KO:K20217] [EC:2.3.2.23]
103472066  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
103473220  [KO:K04552] [EC:2.3.2.23]
103473834  trim32; E3 ubiquitin-protein ligase TRIM32 isoform X1 [KO:K10607] [EC:2.3.2.27]
103473874  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
103473888  [KO:K10594] [EC:2.3.2.26]
103474062  skp2; S-phase kinase-associated protein 2 [KO:K03875]
103474443  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
103474446  rnf7; RING-box protein 2 [KO:K10611]
103474461  [KO:K03869]
103474472  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
103474565  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
103474573  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
103475082  [KO:K10612]
103475206  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
103475480  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
103475825  [KO:K10447]
103475850  cdc23; cell division cycle protein 23 homolog [KO:K03355]
103475959  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
103476083  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
103476312  [KO:K04707] [EC:2.3.2.27]
103476351  cul5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
103476371  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
103476439  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
103476564  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
103476725  [KO:K06689] [EC:2.3.2.23]
103477069  [KO:K10587] [EC:2.3.2.26]
103477150  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
103477296  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
103477385  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103477708  [KO:K20217] [EC:2.3.2.23]
103477709  [KO:K20217] [EC:2.3.2.23]
103477907  [KO:K22518] [EC:2.3.2.27]
103477972  [KO:K10447]
103478070  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
103478194  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
103478595  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
103478842  rfwd2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
103479019  [KO:K03364]
103479028  cdc16; cell division cycle protein 16 homolog [KO:K03353]
103479391  [KO:K03869]
103479443  [KO:K03364]
103479457  [KO:K02207] [EC:2.3.2.23]
103479604  cdc20; cell division cycle protein 20 homolog [KO:K03363]
103479613  aire; autoimmune regulator isoform X1 [KO:K10603]
103480831  anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
103481064  ube2i; SUMO-conjugating enzyme UBC9 isoform X1 [KO:K10577]
103481094  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103481213  det1; DET1 homolog [KO:K10571]
103481274  brca1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
103481364  tceb2; transcription elongation factor B polypeptide 2 [KO:K03873]
103481455  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
103481519  socs3; suppressor of cytokine signaling 3 [KO:K04696]
103482243  cul2; cullin-2 [KO:K03870]
103482265  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
103482472  tceb1; transcription elongation factor B polypeptide 1 [KO:K03872]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pret03050  Proteasome
KO pathway
ko04120   

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