Proteiniphilum propionicum: KDN43_07430
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Entry
KDN43_07430 CDS
T08430
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
proj
Proteiniphilum propionicum
Pathway
proj03030
DNA replication
proj03410
Base excision repair
proj03420
Nucleotide excision repair
proj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
proj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDN43_07430 (ligA)
03410 Base excision repair
KDN43_07430 (ligA)
03420 Nucleotide excision repair
KDN43_07430 (ligA)
03430 Mismatch repair
KDN43_07430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
proj03032
]
KDN43_07430 (ligA)
03400 DNA repair and recombination proteins [BR:
proj03400
]
KDN43_07430 (ligA)
Enzymes [BR:
proj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDN43_07430 (ligA)
DNA replication proteins [BR:
proj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDN43_07430 (ligA)
DNA repair and recombination proteins [BR:
proj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDN43_07430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDN43_07430 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDN43_07430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDN43_07430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Auto_anti-p27
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ULB35834
LinkDB
All DBs
Position
1825224..1827236
Genome browser
AA seq
670 aa
AA seq
DB search
METVKEQIETLRRELHEHNYSYYVLSHPTISDFEFDRLMRQLTELEAKYPEFYDPNSPSV
RVGSDINKNFTQVVHSYPMLSLQNTYSEGEAADFYNRVKRALNEDFDIVCELKYDGTSIS
LIYENGRLMRAVTRGDGKMGDDVTDNVRTIRNVPLVLRGENIPPYLEVRGEILMPWSSFD
ALNRERAEQEEPLFANPRNAASGTLKMQDSRVVASRKLESFIYYMIGEDLPTGSHFNNMA
LARTWGLNVSDAMKRCSTLDEIFDYLKYWDSERKNLPVTTDGVVLKVDSISQQRNLGSTS
KFPRWSIAYKFNAERAVTRLESVSYQVGRTGAVTPVANLEPVLLSGTTVKRASLYNEDAI
LALDLHIGDMVYVEKGGEIIPKITGVDKESRFLLGDKVTFARKCPDCATPLVRNEDEAIH
YCPNSEGCPTQIKGRIEHFVTRKAMNITIGPENISLLYEKGLINDAADLYSLRFHDLVNL
ERWGETSANNLLESIEKSKSVPYERVLFALGIRFVGETVAQKLAHAFPDIDALAEASSEQ
LTLVEEIGERIAQSVIDFFRNPGFACFVKRLRGHGLQFALSEDLMASKTDKLKGKTIVIS
GTFELHSRDDYKAMILRNGGKNSGSVSKNTDYILAGENMGPAKLETARKLGIKIINEKTF
LEMLQTTVAQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagtaaaagaacagatagaaacacttcgaagagagcttcatgaacataattac
agctattatgtcttgtcgcacccaacgatctctgatttcgagttcgacaggttaatgagg
cagcttactgaacttgaggctaaataccccgagttctacgatcctaattcaccgtcggtg
cgcgtagggagcgatatcaacaagaatttcacccaggtggtgcatagctatcccatgcta
tcgttgcaaaacacctactctgagggagaggcagccgacttttacaatcgtgttaagagg
gccttgaatgaagattttgatatagtatgcgagctgaaatatgatggaacttcaatatcg
cttatttacgaaaatgggaggctgatgcgtgctgtaacacgaggcgacggaaagatgggc
gatgatgttaccgataatgtgcgtacaatccgcaacgtacctctggtactgagaggtgaa
aatataccgccttatttggaggtcagaggtgagatattgatgccatggagctcttttgat
gctcttaacagagagcgggccgagcaggaagagcctctgtttgccaatccccgcaatgct
gcatctggcacgttgaaaatgcaggattcacgagtggtggcttcccgcaaactggagtca
ttcatctattatatgattggcgaggatttgcctacgggcagccattttaataatatggcc
cttgcccgtacatggggattgaatgtctccgatgcaatgaagaggtgcagtacgctcgat
gaaatattcgattatctgaaatattgggacagtgagcgcaaaaacctgcctgtaacaacc
gatggcgttgttctcaaggtagattcaatttcgcaacaacgaaatctgggttctacctcc
aagttcccccgatggtctatagcctataagttcaatgctgagcgggcagtcacccggtta
gaatcggtctcataccaggtagggcgtaccggggcggtcactcctgttgccaatcttgag
ccggtactgctttcaggtacaaccgttaaaagggcgtcactctataacgaagatgccatc
cttgcgctcgatctgcatattggcgacatggtgtatgtagagaagggaggggagattatt
ccaaagatcaccggtgtggacaaggagtcacgtttcctattaggcgataaagtaacattt
gcccgtaaatgtcccgattgcgcgacaccgcttgttcgtaatgaggacgaggcaatacac
tattgccccaatagcgaagggtgccccacgcagataaaggggcgcatagagcattttgtc
acacgtaaggcaatgaacataaccattgggccggaaaacatctcactgctttatgaaaag
gggcttattaatgatgctgccgacctgtattcattgaggttccacgatctggtgaacctt
gagcgatggggagaaaccagcgccaataatcttcttgagagcatagaaaagtcaaagtcg
gtaccctatgaaagggtcctttttgctttgggaatacgcttcgtcggcgaaacagtagca
cagaaacttgcgcatgcattccctgatatagatgcattggcagaggcatcatcagaacag
ctgactttggtagaagagattggcgaacgtattgcacagagtgttatagattttttcagg
aatcccggctttgcctgtttcgttaaacgtcttcgcggacacggattgcaatttgcttta
agtgaagatttaatggcttcaaaaaccgataagttgaaagggaagacaatcgtcataagc
ggaacttttgaacttcattcgcgtgatgattataaagcaatgatcctccggaatggagga
aagaacagcggatcagtatcaaaaaacaccgattatattctcgctggagagaatatgggg
ccggccaagctggagacagcacggaaactgggcataaagattatcaacgagaaaacattt
ctggagatgttgcagacaacagtagcccagtaa
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