KEGG   PATHWAY: psom00195
Entry
psom00195                   Pathway                                
Name
Photosynthesis - Papaver somniferum (opium poppy)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
psom00195  Photosynthesis
psom00195

Module
psom_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:psom00195]
psom_M00161  Photosystem II [PATH:psom00195]
psom_M00163  Photosystem I [PATH:psom00195]
Organism
Papaver somniferum (opium poppy) [GN:psom]
Gene
26895662  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
26895729  psbB; photosystem II 47 kDa protein [KO:K02704]
113312756  uncharacterized protein LOC113312756 [KO:K02705]
26895688  psbC; photosystem II 44 kDa protein [KO:K02705]
26895687  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
26895718  psbE; photosystem II protein V [KO:K02707]
26895717  psbF; photosystem II protein VI [KO:K02708]
26895732  psbH; photosystem II protein H [KO:K02709]
26895668  psbI; photosystem II protein I [KO:K02710]
26895715  psbJ; photosystem II protein J [KO:K02711]
26895667  psbK; photosystem II protein K [KO:K02712]
26895716  psbL; photosystem II protein L [KO:K02713]
26895682  psbM; photosystem II protein M [KO:K02714]
113295964  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
113289269  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
113278696  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
113322449  psbP-like protein 1, chloroplastic [KO:K02717]
113340128  psbP-like protein 1, chloroplastic [KO:K02717]
113290227  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
113315062  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
113306865  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
113300489  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
113287825  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
113317379  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
113292937  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
113304155  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
113348951  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
113348419  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
113348621  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
113279037  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
113290172  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
113290169  uncharacterized protein LOC113290169 isoform X1 [KO:K03541]
113346453  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
113356477  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
26895730  psbT; photosystem II protein T [KO:K02718]
113318671  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
113335462  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
113350004  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
113347245  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
113276148  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
113282468  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
26895690  psbZ; photosystem II protein Z [KO:K02724]
113319277  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
113348853  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
113316882  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
113333458  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
113330092  uncharacterized protein LOC113330092 [KO:K02689] [EC:1.97.1.12]
26895695  psaA; photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
26895694  psaB; photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
26895767  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
113347111  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
113333147  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
113317626  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
113333531  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
113282766  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
113355862  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
113297085  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
113302317  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
113317747  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
113303911  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
26895711  psaI; photosystem I subunit VIII [KO:K02696]
26895723  psaJ; photosystem I subunit IX [KO:K02697]
113291802  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
113279464  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
113315561  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
113283991  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
113289762  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
113300461  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
113309655  photosystem I subunit O-like [KO:K14332]
113322010  photosystem I subunit O-like [KO:K14332]
113277802  uncharacterized protein LOC113277802 [KO:K02634]
26895714  petA; cytochrome f [KO:K02634]
26895733  petB; cytochrome b6 [KO:K02635]
113287773  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
113305396  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
26895734  petD; cytochrome b6/f complex subunit IV [KO:K02637]
26895720  petG; cytochrome b6/f complex subunit V [KO:K02640]
26895681  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
113291578  plastocyanin-like [KO:K02638]
113289033  plastocyanin [KO:K02638]
113313602  ferredoxin, root R-B1-like [KO:K02639]
113321016  ferredoxin, root R-B1-like [KO:K02639]
113347125  ferredoxin C 1, chloroplastic-like [KO:K02639]
113306721  ferredoxin-like [KO:K02639]
113334444  ferredoxin C 2, chloroplastic-like [KO:K02639]
113332958  ferredoxin C 1, chloroplastic-like [KO:K02639]
113310384  ferredoxin, root R-B2-like [KO:K02639]
113322017  ferredoxin, root R-B2-like [KO:K02639]
113283393  ferredoxin [KO:K02639]
113356573  ferredoxin [KO:K02639]
113356115  ferredoxin-like [KO:K02639]
113358064  ferredoxin C 2, chloroplastic-like [KO:K02639]
113288900  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
113290546  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
113330617  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
113357166  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
113350415  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
113347667  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
113289992  uncharacterized protein LOC113289992 [KO:K08906]
113326451  cytochrome c6, chloroplastic-like [KO:K08906]
26895707  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
113335361  uncharacterized protein LOC113335361 [KO:K02112] [EC:7.1.2.2 7.2.2.1]
26895708  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
113317791  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
113348575  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
26895672  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
113321870  ATP synthase delta chain, chloroplastic-like [KO:K02113]
113286978  ATP synthase delta chain, chloroplastic-like [KO:K02113]
113282187  ATP synthase delta chain, chloroplastic-like [KO:K02113]
113348968  ATP synthase subunit b', chloroplastic-like [KO:K02109]
113348392  ATP synthase subunit b', chloroplastic-like [KO:K02109]
26895674  atpH; ATP synthase CF0 C subunit [KO:K02110]
26895675  atpI; ATP synthase CF0 A subunit [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
psom00196  Photosynthesis - antenna proteins
psom00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
LinkDB

DBGET integrated database retrieval system