KEGG   Pan troglodytes (chimpanzee): 107974879
Entry
107974879         CDS       T01005                                 
Symbol
TARDBP
Name
(RefSeq) TAR DNA-binding protein 43
  KO
K23600  TAR DNA-binding protein 43
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr03015  mRNA surveillance pathway
ptr05014  Amyotrophic lateral sclerosis
ptr05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107974879 (TARDBP)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    107974879 (TARDBP)
   05022 Pathways of neurodegeneration - multiple diseases
    107974879 (TARDBP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptr03019]
    107974879 (TARDBP)
Messenger RNA biogenesis [BR:ptr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     107974879 (TARDBP)
SSDB
Motif
Pfam: TDP-43_C TDP-43_N RRM_1 RRM_7 RRM_PARP14_3 RRM_3 RL
Other DBs
NCBI-GeneID: 107974879
NCBI-ProteinID: XP_016809429
Ensembl: ENSPTRG00000000136 ENSPTRG00000048576
VGNC: 10944
UniProt: H2PY00 A0A6D2XRF9
LinkDB
Position
1:complement(220974548..220986253)
AA seq 413 aa
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGNPGGFGNQGGFGNSRGGGAGLGN
NQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQR
EPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgtctgaatatattcgggtaaccgaagatgagaacgatgagcccattgaaataccatcg
gaagacgatgggacggtgctgctctccacggttacagcccagtttccaggggcgtgtggg
cttcgctacaggaatccagtgtctcagtgtatgagaggtgtccggctggtagaaggaatt
ctgcatgcccccgatgctggctggggaaatctggtgtatgttgtcaactatccaaaagat
aacaaaagaaaaatggatgagacagatgcttcatcggcagtgaaagtgaaaagagcagtc
cagaaaacatccgatttaatagtgttgggtctcccatggaaaacaaccgaacaggacctg
aaagagtattttagtacctttggagaagttcttatggtgcaggtcaagaaagatcttaag
actggtcattcaaaggggtttggctttgttcgttttacggaatatgaaacacaagtgaaa
gtaatgtcacagcgacatatgatagatggacgatggtgtgactgtaaacttcctaattct
aagcaaagccaagatgagcctttgagaagcagaaaagtgtttgtggggcgctgtacagag
gacatgactgaggatgagctgcgggagttcttctctcagtacggggatgtgatggatgtc
ttcatccccaagccattcagggcctttgcctttgttacatttgcagatgatcagattgcg
cagtctctttgtggagaggacttgatcattaaaggaatcagcgttcatatatccaatgcc
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtaatccaggt
ggctttgggaatcagggtggatttggtaatagcagagggggtggagctggtttgggaaac
aatcaaggtagtaatatgggtggtgggatgaacttcggtgcgttcagcattaatccagcc
atgatggctgccgcccaggcagcactacagagcagttggggtatgatgggcatgttagcc
agccagcagaaccagtcaggcccatcaggtaataaccaaaaccaaggcaacatgcagagg
gagccaaaccaggccttcggttctggaaataactcttatagcggctctaattctggtgca
gcaattggttggggatcagcatccaatgcagggtcgggcagtggttttaatggaggcttt
ggctcaagcatggattctaagtcttctggctggggaatgtag

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