Pan troglodytes (chimpanzee): 455319
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Entry
455319 CDS
T01005
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ptr
Pan troglodytes (chimpanzee)
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptr03036
]
455319 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ptr03400
]
455319 (SMCHD1)
Chromosome and associated proteins [BR:
ptr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
455319 (SMCHD1)
DNA repair and recombination proteins [BR:
ptr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
455319 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
455319
NCBI-ProteinID:
XP_016788893
Ensembl:
ENSPTRG00000009831
VGNC:
5208
LinkDB
All DBs
Position
17:complement(28092856..28240714)
Genome browser
AA seq
2026 aa
AA seq
DB search
MAAADGGGPGGASVGTKEDGGGVGHRMVYLFDRREKESELGDRPLQVGERSDYAGFRASV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
VKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP
FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK
NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VSMLELLQLMVSLKTSNLLNNFRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQY
GNQIQAFSPSSLSSLSIAGVGLDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWR
EFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRNLQNPIIVQLCDQWDNPAPVQHVK
ISLTKASNLKLMPSNQQHKTDEKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKL
MILPDPEKPVRLNVKYDKDASFLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLCT
SGNRPPANAETFSCNKIKDNDKEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILHSEQV
IVEVLPNQPVKLVPKIKPPTPAVSNVRSVASRTLVRDLHLSITDEYDNHTGIDLVGTIIA
TIKGSNEEDTDTPLFIGKVRTLEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPL
LSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVE
EGRLKEAQLRNELKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGS
GDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSI
YKKTLPDWKRPLPHFRNGKLYFKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDN
LDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQC
LILGEQIDLLQQYRSAVCKLDSVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKL
GMTPIRKCNDSLRHSPKVETTDCPVPPKRMRREATRQNRIITKTDV
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacggcggcgggcctggtggggcctctgtggggactaaggaggatggc
ggaggcgtcggccacaggatggtgtacttgtttgatcggcgcgaaaaggagtccgagctc
ggggaccggcctctgcaggtcggggagcgctcggactacgcgggatttcgcgcctctgtg
tgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcaccttatacctgcta
cagtcggtcaatcagttgctactgacagctacgaaagaacgaattgacttcttacctcac
tatgacacactggttaaaagtggcatgtatgaatattatgccagtgaaggacaaaatcct
ttgccatttgctcttgcggaattaattgacaattcattgtctgctacttctcgtaacatt
ggggttagaagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttgtcaaaattcacaaggcaaggtgactttgaaagtgatcattcagggtatgttcgt
ccagtaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaag
caagctgtcttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaa
gatgttcacgagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagtggatatattagaaacagaaagccctctgattctgttcacattacaaat
gatgatgaaagatttctacatcatcttatcatagaggagaaggaaaaagatagctttact
gctgtggttatcacaggggtacaaccagaacacatacagtacttgaaaaattatttccac
ctttggacacgacagttagcgcatatttatcactactatattcatggcccaaaaggaaat
gaaatacgaacatcaaaagaagttgaacctttcaacaatattgatattgaaatttctatg
tttgaaaaagggaaggtacctaagattgtcaacctaagggaaatacaagacgacatgcag
acgttgtatgtaaacacagcagctgatagttttgaattcaaagctcatgttgaaggagat
ggtgtagtggaagggattatccgttatcatccattcttatatgatagagaaacttaccct
gatgatccatgctttccatcaaaattaaaagatgaagatgatgaagatgattgtttcata
cttgagaaagcagctagagggaaaaggcctatttttgaatgtttctggaatggacgttta
ataccatatacatcagttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccaattgaatgctacaataggatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaattgacgtttatggatcttgagctaaaattgaaagataagaacacc
ctttttacaaggattttaaatggacaggaacagcgaatgaaaattgacagagaatttgct
ttgtggctgaaggactgtcatgaaaagtatgataaacaaataaaatttacactttttaag
ggagtaattacacgtcctgatcttccttctaaaaagcaaggtccctgggcaacatatgca
gcaatagaatgggatggaaagatatacaaagcaggacagctggtcaagacaatcaagaca
cttcccctcttttatggaagcatagtaagattttttctttatggcgatcatgatggagaa
gtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactatatgatgaa
gtaaaaactgtgccaattgcaaagctggataggacagttgctgagaaagctgttaaaaaa
tatgtagaagatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaagga
gatgaattattgcctaatgagattaggcctgctggaacccctattggtgcgttaagaatt
gaaatactgaataaaaaaggggaagcaatgcaaaagcttccaggaacaagccatggaggg
tcaaagaaactcctggttgagctcaaagttattttacattcttcaagtggaaataaagag
attatttcgcatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcagaagttggggaattataccttgaaattacaagttgtgttgaatgaaagtaat
gcggacacttatgcaggaagaccactaccatctaaagcaattaagttttctgttaaagag
ggtaagccagagaaattttcatttggtcttctggatcttccttttcgtgttggagttcca
tttaatatccctctggagtttcaggatgaatttggtcataccagtcaactagtaactgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaagga
ccaaattgtgtaattcgaggtgttacagccaagggccctgtaaactcttgtcaaggcaag
aattataatctgaaggttactctgcctggcttaaaagaagactcacagattttgaaaatt
agattactacctggtcaccctcgtcgactgaaagtgaaacctgattctgaaattttagtt
atagaaaatggaacagctttcccatttcaggtggaagttttagatgaatcagacaacata
acagcacaaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccagtc
tatgttgtagattgcagtagttctggaaccagtattttaacaggatctgcaattcaagtt
cagaatattaaaaaagaccagacgcttaaagcaagaattgaaatacctagttgtaaagat
gtggcacctgtggagaagactattaagttgcttcccagtagccatgttgcaagactacaa
atattcagtgtagaaggacaaaaggcaattcagatcaaacatcaggatgaggttaattgg
atagcgggtgatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaa
atcaatataacatcagctttagcagaaaaaattaaagttaattggactcctgagattaac
aaagaacacttgctacagggtctgcttcctgatgtgcaagtaccaacatctgtaaaagat
atgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcgtttaca
gtaagcatgttggaactacttcaattaatggtgtcactaaagacttctaacttgttaaac
aatttcagaccacttcctgatgaacctaaacatttaaaatgtgaaatgaaaggaggaaaa
acagtacagatgggccaagagcttcaaggagaagtagttataataattacggatcagtac
ggaaatcagattcaagcattttcaccaagttctttatcttctttgtcaattgctggggtt
ggacttgatagctcaaatttgaaaacaacctttcaggaaaacacacagagtataagtgta
agaggcatcaaatttattccaggtcctcctggaaataaggatctttgttttacttggcgc
gagttttctgactttattcgagtgcaactaatttctggacctcctgctaaacttctcctt
atagactggccagaactaaaggagtccattccagtgattaatggaagaaatttacagaac
cctattattgttcaactttgtgatcagtgggataatccagcaccggtacaacacgttaaa
ataagtcttacaaaagctagcaatttaaagctcatgccttcaaaccaacagcataaaaca
gatgagaaaggcagggctaatttgggagtattcagtgtttttgcccctaggggagagcat
actcttcaggttaaagccatctataacaaaagtatcatagaaggacctataattaagtta
atgattcttccagacccagaaaaacccgttcgtctcaatgttaaatatgacaaagatgcg
tccttcttagcagggggtcttttcactgattttatgattagtgttatttctgaagatgac
agtatcattaaaaacattaatccagcacgtatttccatgaaaatgtggaagctgtgtacc
agtgggaaccgacccccagcaaatgcagaaacatttagttgtaataaaataaaagataat
gacaaggaagatggctgcttctatttcagggataaagtaattcctaataaagtggggaca
tattgtatccagtttggttttatgatggataaaacaaatattctccacagtgaacaggtt
atagttgaagtcctgcctaatcaacctgtgaagttagtacctaaaattaaaccacctaca
ccagctgtttcaaatgttcgctcagttgccagtaggaccttggtcagagatctacatctt
agtatcacggatgagtacgacaaccatactggaattgatttggttggcactataatagcc
accattaaaggctctaatgaggaagatactgataccccactttttattgggaaagttaga
acacttgaattccccttcgtgaatggttcggctgaaatcatgagtctggtgctggcagaa
agtagtcctggaagggatagtactgaatattttattgtatttgagccccggctaccactt
ttatcaagaaccttagaaccatatatcctaccgttcatgttttacaatgatgttaagaag
cagcaacaaatggcagcacttacaaaagaaaaggaccaattatctcagtctattgttatg
tataaaagtttatttgaagccagccaacagcttcttaatgaaatgaaatgtcaagttgaa
gaaggaagattaaaagaggcccaattgcgaaatgaactaaaaatacataatattgacatt
cctacaacacaacaggtgccacacattgaagcacttctgaaaagaaagctatcagaacaa
gaagaactgaagaaaaaacctagaagatcgtgtactcttccaaactatactaaaggcagt
ggagatgttttgggaaagattgcacatctagcacaaattgaagatgatagagctgcgatg
gttatttcttggcatctggcaagtgacatggactgtgtagtcaccctaaccactgacgct
gcacgtcgtatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatt
tacaagaagactcttccagactggaaaagacctctacctcatttccgaaatggaaaattg
tattttaaacccattggagatccagtctttgctcgagacttgttaacatttccagataat
gtagaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataat
ctggatgcggccaatcattatagaaaagaggttgttaaaattacacactgtcctacactg
ctgaccagagacggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaa
gctcctccaatggataaacttcggggaatggtatttggagctccagttccaaaacagtgt
ctgatcttaggggaacaaatagatcttcttcagcagtatcgttctgctgtgtgcaaacta
gacagtgtgaataaggatcttaacagtcaattagagtaccttcgcactccggatatgagg
aagaaaaagcaagaacttgatgaacatgagaaaaatctcaaactaatagaggaaaaacta
ggtatgactcccatacgtaagtgtaatgactcattgcgtcattcaccaaaggttgagacg
acagattgtccagttcctcctaaaagaatgagacgagaagctacaagacaaaataggatt
ataaccaaaacagatgtatga
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integrated database retrieval system
