KEGG   PATHWAY: pxn00920
Entry
pxn00920                    Pathway                                
Name
Sulfur metabolism - Pseudomonas xantholysinigenes
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
pxn00920  Sulfur metabolism
pxn00920

Module
pxn_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pxn00920]
pxn_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pxn00920]
Other DBs
GO: 0006790
Organism
Pseudomonas xantholysinigenes [GN:pxn]
Gene
HU772_016870  sulfate ABC transporter substrate-binding protein [KO:K02048]
HU772_023745  sulfate ABC transporter substrate-binding protein [KO:K23163]
HU772_023740  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
HU772_023735  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
HU772_023730  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
HU772_023915  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
HU772_023925  tauC; taurine ABC transporter permease TauC [KO:K15552]
HU772_023920  tauB; taurine ABC transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
HU772_023930  tauD; taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
HU772_023895  sulfonate ABC transporter substrate-binding protein [KO:K15553]
HU772_000915  ABC transporter substrate-binding protein [KO:K15553]
HU772_023885  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
HU772_000910  ABC transporter permease subunit [KO:K15554]
HU772_023880  ssuB; aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
HU772_000905  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
HU772_023890  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
HU772_013880  msuE; FMN reductase [KO:K00299] [EC:1.5.1.38]
HU772_023900  ssuE; NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
HU772_004505  cysN; sulfate adenylyltransferase subunit CysN [KO:K00955] [EC:2.7.7.4 2.7.1.25]
HU772_004495  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
HU772_001200  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
HU772_008930  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
HU772_006440  bifunctional nitrate reductase/sulfite reductase flavoprotein subunit alpha [KO:K00380] [EC:1.8.1.2]
HU772_020350  sulfite reductase flavoprotein subunit alpha [KO:K00380] [EC:1.8.1.2]
HU772_015410  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
HU772_000040  NAD(P)/FAD-dependent oxidoreductase [KO:K17218] [EC:1.8.5.4]
HU772_022375  rhdA; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
HU772_023430  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
HU772_002145  glpE; thiosulfate sulfurtransferase GlpE [KO:K02439] [EC:2.8.1.1]
HU772_020450  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
HU772_023940  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
HU772_017995  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
HU772_023330  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
HU772_007770  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
HU772_009520  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K10764] [EC:2.5.1.-]
HU772_013520  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
HU772_013515  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
HU772_001980  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
HU772_001970  phenylacyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
pxn00260  Glycine, serine and threonine metabolism
pxn00270  Cysteine and methionine metabolism
pxn00680  Methane metabolism
pxn00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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