KEGG   PATHWAY: pym02010
Entry
pym02010                    Pathway                                
Name
ABC transporters - Pseudomonas yamanorum
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
pym02010  ABC transporters
pym02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Pseudomonas yamanorum [GN:pym]
Gene
AK972_0052  [KO:K02012]
AK972_0053  [KO:K02011]
AK972_0070  [KO:K15553]
AK972_0072  [KO:K15554]
AK972_0073  [KO:K15555] [EC:7.6.2.14]
AK972_0080  [KO:K11073]
AK972_0081  [KO:K11073]
AK972_0082  [KO:K11076] [EC:7.6.2.16]
AK972_0083  [KO:K11075]
AK972_0084  [KO:K11074]
AK972_0100  [KO:K02424]
AK972_0120  [KO:K02010] [EC:7.2.2.7]
AK972_0121  [KO:K02011]
AK972_0122  [KO:K02012]
AK972_0148  [KO:K09812]
AK972_0149  [KO:K09811]
AK972_0249  [KO:K02000] [EC:7.6.2.9]
AK972_0250  [KO:K02001]
AK972_0251  [KO:K02002]
AK972_0259  [KO:K02002]
AK972_0334  [KO:K17213]
AK972_0467  [KO:K06858]
AK972_0568  [KO:K12536]
AK972_0663  [KO:K05847] [EC:7.6.2.9]
AK972_0664  [KO:K05846]
AK972_0665  [KO:K05845]
AK972_0666  [KO:K05846]
AK972_0669  [KO:K12372]
AK972_0670  [KO:K12371]
AK972_0671  [KO:K12370]
AK972_0672  [KO:K12369]
AK972_0673  [KO:K12368]
AK972_0675  [KO:K12368]
AK972_0676  [KO:K12368]
AK972_0677  [KO:K12368]
AK972_0682  [KO:K02471]
AK972_0730  [KO:K06861] [EC:7.5.2.5]
AK972_0735  [KO:K02065]
AK972_0736  [KO:K02066]
AK972_0737  [KO:K02067]
AK972_0738  [KO:K07323]
AK972_0739  [KO:K07122]
AK972_0808  [KO:K10013]
AK972_0852  [KO:K09969]
AK972_0853  [KO:K09970]
AK972_0854  [KO:K09971]
AK972_0855  [KO:K09972] [EC:7.4.2.1]
AK972_0940  [KO:K10004] [EC:7.4.2.1]
AK972_0941  [KO:K10002]
AK972_0942  [KO:K10003]
AK972_0943  [KO:K10001]
AK972_0951  [KO:K02010] [EC:7.2.2.7]
AK972_1121  [KO:K02036] [EC:7.3.2.1]
AK972_1122  [KO:K02038]
AK972_1123  [KO:K02037]
AK972_1124  [KO:K02040]
AK972_1185  [KO:K17315]
AK972_1186  [KO:K17316]
AK972_1187  [KO:K17317]
AK972_1188  [KO:K10112] [EC:7.5.2.-]
AK972_1215  [KO:K02002]
AK972_1216  [KO:K15553]
AK972_1282  [KO:K17315]
AK972_1287  [KO:K10022]
AK972_1288  [KO:K10024]
AK972_1289  [KO:K10023]
AK972_1291  [KO:K10025] [EC:7.4.2.1]
AK972_1394  [KO:K10537]
AK972_1395  [KO:K10539] [EC:7.5.2.12]
AK972_1396  [KO:K10538]
AK972_1515  [KO:K02193] [EC:7.6.2.5]
AK972_1516  [KO:K02194]
AK972_1517  [KO:K02195]
AK972_1518  [KO:K02196]
AK972_1530  [KO:K02041] [EC:7.3.2.2]
AK972_1531  [KO:K02044]
AK972_1532  [KO:K02042]
AK972_1548  [KO:K02048]
AK972_1571  [KO:K02002]
AK972_1621  [KO:K11073]
AK972_1710  [KO:K09816]
AK972_1711  [KO:K09817] [EC:7.2.2.20]
AK972_1712  [KO:K09815]
AK972_1726  [KO:K02072]
AK972_1727  [KO:K02073]
AK972_1798  [KO:K06160]
AK972_1804  [KO:K05685] [EC:7.6.2.-]
AK972_1811  [KO:K10017] [EC:7.4.2.1]
AK972_1812  [KO:K10015]
AK972_1813  [KO:K10016]
AK972_1814  [KO:K10014]
AK972_1908  [KO:K02040]
AK972_1997  [KO:K05685] [EC:7.6.2.-]
AK972_2021  [KO:K11073]
AK972_2033  [KO:K11959]
AK972_2034  [KO:K11960]
AK972_2035  [KO:K11961]
AK972_2036  [KO:K11962]
AK972_2037  [KO:K11963]
AK972_2066  [KO:K10439]
AK972_2067  [KO:K10441] [EC:7.5.2.7]
AK972_2068  [KO:K10440]
AK972_2076  [KO:K01996]
AK972_2077  [KO:K01995]
AK972_2078  [KO:K01998]
AK972_2079  [KO:K01997]
AK972_2080  [KO:K01999]
AK972_2129  [KO:K15551]
AK972_2172  [KO:K14698] [EC:7.-.-.-]
AK972_2173  [KO:K14699] [EC:7.-.-.-]
AK972_2256  [KO:K15553]
AK972_2278  [KO:K13896]
AK972_2279  [KO:K13895]
AK972_2280  [KO:K13894]
AK972_2281  [KO:K13893]
AK972_2285  [KO:K11073]
AK972_2336  [KO:K10227]
AK972_2369  [KO:K17213]
AK972_2370  [KO:K17215]
AK972_2371  [KO:K17214]
AK972_2380  [KO:K02002]
AK972_2393  [KO:K17324]
AK972_2394  [KO:K17325]
AK972_2395  [KO:K17322]
AK972_2396  [KO:K17323]
AK972_2398  [KO:K17321]
AK972_2573  [KO:K17213]
AK972_2663  [KO:K10111] [EC:7.5.2.-]
AK972_2664  [KO:K10229]
AK972_2665  [KO:K10228]
AK972_2666  [KO:K10227]
AK972_2753  [KO:K15555] [EC:7.6.2.14]
AK972_2754  [KO:K15554]
AK972_2755  [KO:K15553]
AK972_2848  [KO:K15553]
AK972_2849  [KO:K15554]
AK972_2850  [KO:K15555] [EC:7.6.2.14]
AK972_2856  [KO:K11073]
AK972_2873  [KO:K15553]
AK972_2894  [KO:K10537]
AK972_2927  [KO:K10439]
AK972_2928  [KO:K10440]
AK972_2929  [KO:K10441] [EC:7.5.2.7]
AK972_2970  [KO:K12536]
AK972_2976  [KO:K11073]
AK972_3002  [KO:K10440]
AK972_3003  [KO:K10440]
AK972_3004  [KO:K10441] [EC:7.5.2.7]
AK972_3005  [KO:K10439]
AK972_3045  [KO:K02020]
AK972_3046  [KO:K02018]
AK972_3047  [KO:K02017] [EC:7.3.2.5]
AK972_3229  [KO:K13893]
AK972_3230  [KO:K13893]
AK972_3231  [KO:K13894]
AK972_3232  [KO:K13895]
AK972_3233  [KO:K13896]
AK972_3327  [KO:K11073]
AK972_3375  [KO:K15553]
AK972_3376  [KO:K15555] [EC:7.6.2.14]
AK972_3377  [KO:K15554]
AK972_3383  [KO:K15553]
AK972_3385  [KO:K15553]
AK972_3410  [KO:K15553]
AK972_3413  [KO:K17207]
AK972_3414  [KO:K17206]
AK972_3415  [KO:K17205]
AK972_3501  [KO:K15553]
AK972_3502  [KO:K15554]
AK972_3503  [KO:K15555] [EC:7.6.2.14]
AK972_3612  [KO:K10543]
AK972_3613  [KO:K10545] [EC:7.5.2.10]
AK972_3614  [KO:K10544]
AK972_3772  [KO:K11073]
AK972_3820  [KO:K06726] [EC:5.4.99.62]
AK972_3823  [KO:K10440]
AK972_3824  [KO:K10441] [EC:7.5.2.7]
AK972_3825  [KO:K10439]
AK972_3843  [KO:K02012]
AK972_3844  [KO:K02011]
AK972_3845  [KO:K02010] [EC:7.2.2.7]
AK972_3983  [KO:K11073]
AK972_4221  [KO:K09808]
AK972_4222  [KO:K09810] [EC:7.6.2.-]
AK972_4223  [KO:K09808]
AK972_4417  [KO:K18893]
AK972_4491  [KO:K02020]
AK972_4635  [KO:K01999]
AK972_4637  [KO:K01997]
AK972_4638  [KO:K01998]
AK972_4639  [KO:K01995]
AK972_4640  [KO:K01996]
AK972_4678  [KO:K10014]
AK972_4679  [KO:K10016]
AK972_4680  [KO:K10015]
AK972_4682  [KO:K10017] [EC:7.4.2.1]
AK972_4902  [KO:K09969]
AK972_4934  [KO:K11720]
AK972_4935  [KO:K07091]
AK972_5328  [KO:K11959]
AK972_5329  [KO:K11960]
AK972_5330  [KO:K11961]
AK972_5331  [KO:K11962]
AK972_5332  [KO:K11963]
AK972_5365  [KO:K01996]
AK972_5366  [KO:K01995]
AK972_5367  [KO:K01998]
AK972_5368  [KO:K01997]
AK972_5369  [KO:K01999]
AK972_5392  [KO:K02012]
AK972_5393  [KO:K02011]
AK972_5437  [KO:K11085] [EC:7.5.2.6]
AK972_5548  [KO:K02002]
AK972_5554  [KO:K02000] [EC:7.6.2.9]
AK972_5555  [KO:K02001]
AK972_5556  [KO:K02002]
AK972_5607  [KO:K23058]
AK972_5608  [KO:K23055]
AK972_5609  [KO:K23056]
AK972_5610  [KO:K23057]
AK972_5693  [KO:K15551]
AK972_5694  [KO:K10831] [EC:7.6.2.7]
AK972_5695  [KO:K15552]
AK972_5705  [KO:K02424]
AK972_5706  [KO:K10009]
AK972_5707  [KO:K10010] [EC:7.4.2.1]
AK972_5712  [KO:K02073]
AK972_5713  [KO:K02071]
AK972_5714  [KO:K02072]
AK972_5725  [KO:K02073]
AK972_5740  [KO:K15553]
AK972_5741  [KO:K15554]
AK972_5742  [KO:K15555] [EC:7.6.2.14]
AK972_5749  [KO:K02045] [EC:7.3.2.3]
AK972_5750  [KO:K02047]
AK972_5751  [KO:K02046]
AK972_5752  [KO:K23163]
AK972_5794  [KO:K15554]
AK972_5795  [KO:K15555] [EC:7.6.2.14]
AK972_5796  [KO:K15553]
AK972_5799  [KO:K12541]
AK972_5834  [KO:K02066]
AK972_5835  [KO:K02065]
AK972_5836  [KO:K02067]
AK972_5855  [KO:K09815]
AK972_5857  [KO:K09817] [EC:7.2.2.20]
AK972_5858  [KO:K09816]
AK972_5861  [KO:K02071]
AK972_5862  [KO:K02072]
AK972_5863  [KO:K02073]
AK972_5905  [KO:K02002]
AK972_6015  [KO:K11073]
AK972_6030  [KO:K02040]
AK972_6031  [KO:K02037]
AK972_6032  [KO:K02038]
AK972_6033  [KO:K02036] [EC:7.3.2.1]
AK972_6094  [KO:K12368]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

DBGET integrated database retrieval system