KEGG   PATHWAY: rap00920
Entry
rap00920                    Pathway                                
Name
Sulfur metabolism - Rhodovastum atsumiense
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rap00920  Sulfur metabolism
rap00920

Module
rap_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rap00920]
rap_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rap00920]
Other DBs
GO: 0006790
Organism
Rhodovastum atsumiense [GN:rap]
Gene
RHOA_0016  metB; Cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
RHOA_0196  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
RHOA_0204  [KO:K15553]
RHOA_0205  [KO:K15555] [EC:7.6.2.14]
RHOA_0206  [KO:K15554]
RHOA_0207  [KO:K15553]
RHOA_0218  tauB; taurine ABC transporter ATP binding subunit [KO:K15555] [EC:7.6.2.14]
RHOA_0219  [KO:K15553]
RHOA_0220  [KO:K15554]
RHOA_0221  [KO:K15554]
RHOA_0236  tauC; taurine ABC transporter membrane subunit [KO:K15552]
RHOA_0237  [KO:K15552]
RHOA_0238  [KO:K15551]
RHOA_0239  tauB; taurine ABC transporter ATP binding subunit [KO:K10831] [EC:7.6.2.7]
RHOA_0243  [KO:K15553]
RHOA_0282  [KO:K00640] [EC:2.3.1.30]
RHOA_0401  [KO:K15554]
RHOA_0402  ssuB; aliphatic sulfonate ABC transporter ATP binding subunit [KO:K15555] [EC:7.6.2.14]
RHOA_0403  [KO:K15553]
RHOA_0639  cysK; O-acetylserine sulfhydrylase A [KO:K01738] [EC:2.5.1.47]
RHOA_0643  [KO:K01738] [EC:2.5.1.47]
RHOA_0706  dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
RHOA_1327  ssuC; aliphatic sulfonate ABC transporter membrane subunit [KO:K15554]
RHOA_1328  ssuB; Aliphatic sulfonates import ATP-binding protein SsuB 3 [KO:K15555] [EC:7.6.2.14]
RHOA_1329  [KO:K15553]
RHOA_1332  ssuB; aliphatic sulfonate ABC transporter ATP binding subunit [KO:K15555] [EC:7.6.2.14]
RHOA_1334  [KO:K15554]
RHOA_1335  [KO:K15553]
RHOA_1391  cysA; sulfate/thiosulfate ABC transporter ATP binding subunit [KO:K02045] [EC:7.3.2.3]
RHOA_1392  cysW; sulfate/thiosulfate ABC transporter inner membrane subunit CysW [KO:K02047]
RHOA_1393  cysU; sulfate/thiosulfate ABC transporter inner membrane subunit CysU [KO:K02046]
RHOA_1394  sbp; sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp [KO:K23163]
RHOA_1396  cysK; O-acetylserine sulfhydrylase A [KO:K01738] [EC:2.5.1.47]
RHOA_1966  metXA; Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
RHOA_1983  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
RHOA_2060  [KO:K20034] [EC:6.2.1.44]
RHOA_2567  [KO:K15554]
RHOA_2568  [KO:K15555] [EC:7.6.2.14]
RHOA_2680  [KO:K15553]
RHOA_2681  [KO:K15554]
RHOA_2682  [KO:K15554]
RHOA_2683  tauB; taurine ABC transporter ATP binding subunit [KO:K15555] [EC:7.6.2.14]
RHOA_2689  sbp; sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp [KO:K23163]
RHOA_2880  [KO:K00640] [EC:2.3.1.30]
RHOA_3095  [KO:K15553]
RHOA_3306  [KO:K15553]
RHOA_3311  [KO:K15553]
RHOA_3657  tauC; Taurine transport system permease protein TauC [KO:K15552]
RHOA_3658  [KO:K15555] [EC:7.6.2.14]
RHOA_3787  [KO:K15553]
RHOA_3804  [KO:K00380] [EC:1.8.1.2]
RHOA_4023  [KO:K15553]
RHOA_4031  [KO:K15553]
RHOA_4103  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
RHOA_4146  metAA; Homoserine O-acetyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
RHOA_4194  [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RHOA_4195  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RHOA_4196  cysH; Phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
RHOA_4539  dmsB; dimethyl sulfoxide reductase subunit B [KO:K07307]
RHOA_4540  dmsA; dimethyl sulfoxide reductase subunit A [KO:K07306] [EC:1.8.5.3]
RHOA_5185  dmdD; Methylthioacryloyl-CoA hydratase [KO:K20036] [EC:4.2.1.155]
RHOA_5325  [KO:K15553]
RHOA_5326  ssuB; aliphatic sulfonate ABC transporter ATP binding subunit [KO:K15555] [EC:7.6.2.14]
RHOA_5327  [KO:K15554]
RHOA_5367  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
RHOA_5510  cysI; Sulfite reductase [NADPH] hemoprotein beta-component [KO:K00392] [EC:1.8.7.1]
RHOA_5597  nodQ; Sulfate adenylyltransferase subunit 1 / Adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RHOA_5598  cysD; Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RHOA_5599  cysH; Phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
RHOA_5600  cysE; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
RHOA_5692  ttrB; Tetrathionate reductase subunit B [KO:K08358]
RHOA_5693  [KO:K08359]
RHOA_5694  [KO:K08357]
RHOA_5696  [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RHOA_5869  dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
RHOA_6182  [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00163  Propanoate
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rap00260  Glycine, serine and threonine metabolism
rap00270  Cysteine and methionine metabolism
rap00640  Propanoate metabolism
rap00680  Methane metabolism
rap00720  Other carbon fixation pathways
KO pathway
ko00920   

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