Riemerella columbina: NYR17_02080
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Entry
NYR17_02080 CDS
T09247
Name
(GenBank) TolC family protein
KO
K12340
outer membrane protein
Organism
rcl
Riemerella columbina
Pathway
rcl01501
beta-Lactam resistance
rcl01503
Cationic antimicrobial peptide (CAMP) resistance
rcl02020
Two-component system
rcl03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
NYR17_02080
09132 Signal transduction
02020 Two-component system
NYR17_02080
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NYR17_02080
01503 Cationic antimicrobial peptide (CAMP) resistance
NYR17_02080
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rcl02000
]
NYR17_02080
02044 Secretion system [BR:
rcl02044
]
NYR17_02080
01504 Antimicrobial resistance genes [BR:
rcl01504
]
NYR17_02080
Transporters [BR:
rcl02000
]
Other transporters
Pores ion channels [TC:
1
]
NYR17_02080
Secretion system [BR:
rcl02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
NYR17_02080
RTX toxin transporter
NYR17_02080
Multiple protein transporter
NYR17_02080
RaxAB-RaxC type I secretion system protein
NYR17_02080
Antimicrobial resistance genes [BR:
rcl01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
NYR17_02080
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
NYR17_02080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
WKS95549
LinkDB
All DBs
Position
complement(442972..444321)
Genome browser
AA seq
449 aa
AA seq
DB search
MNKHFKILGLFALLFQTGLYAQNAKTLTLPEAIDYAIEHKADAEKARLNIRKGDAEIAEV
KANALPKITVNSTTNYNPLLQQNVLPGEMFGLPGQNVKVSFGQKWQSTNMVQLQQILFNQ
SVFTGLKAAKSTKEFYLINAQLTEEQIIEKVADAYYQVYQAQQMLKNLKDNLDIAEQTIK
IIKGLYDAGLAKKIDYDRTLVSVNNLKANQQQLINAVQLSENALKFMIGMPMEQEISLPE
GTFEPSILVADNAPDFSERTELKLLNKQVELLNWKKKASEAEYYPTATLLANYSWLGQGA
KFPFWHGEKDKVYWSDMATVGLNISIPIFNGFSTKSKVEQDKIEIEKAQANLKETELGLS
LAYHNAATQLQNGLITIKNQENNVQLAEEVMDNTRSNYQYGLATLNDILDAERDLADAKN
NLTKSKLDYKLAEIELLKSQGKLRTLNQK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacattttaaaattttagggcttttcgccttattgttccaaacggggctctat
gcgcagaacgccaagacgctcacgctccccgaggcgatagactacgccatagagcacaaa
gccgatgccgagaaagcaaggctcaacatccgaaaaggcgatgccgaaattgcggaagtg
aaagccaacgccttacccaaaatcacggtgaatagcaccaccaactacaatccgctactc
cagcaaaatgttttgccaggcgaaatgtttgggctccctgggcagaatgttaaagtctct
tttgggcaaaagtggcagagcaccaatatggtgcagttgcagcaaatcctcttcaatcag
tcggtgttcacagggctgaaggcggcaaaatctaccaaagagttttacctcatcaatgcc
caactgaccgaggaacaaatcatcgaaaaggtggcagatgcgtattaccaagtttatcaa
gcgcaacagatgctcaaaaaccttaaagataatttggacattgcagagcaaaccatcaaa
atcatcaaagggctgtatgatgcaggcttagccaaaaagatagattacgacagaactttg
gtatccgtgaataacttgaaagccaaccaacaacagctcatcaacgctgtacagttgagt
gaaaacgccctaaaatttatgattggaatgcctatggagcaagagattagcctaccagaa
ggcacctttgaaccttctattttggtggcggataatgcgcctgatttctccgaaagaacc
gagctcaaactcctcaacaaacaggtggagctcctcaattggaagaaaaaagcctccgag
gcagagtattacccaacggcaacgcttttagccaactatagttggttagggcaaggggca
aaattcccattctggcacggagaaaaggacaaagtttattggtcggatatggcgaccgtg
gggctgaacatcagcattccgattttcaacggcttctctaccaaatccaaagtggaacaa
gataaaatagaaatagaaaaagcccaagccaaccttaaagaaaccgaattggggctcagc
ttagcctatcacaacgccgctacacaactgcaaaacggcttgattaccattaaaaatcaa
gaaaataatgtgcaattggcagaagaagtgatggacaacacccgctctaattaccaatac
ggactggcaacgctgaacgatattttggatgcagaacgcgatttagccgacgccaaaaac
aaccttacaaaatctaaattagactataaacttgccgagatagaactccttaaatctcaa
ggcaaactcagaactttaaaccagaaataa
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