Roseobacter denitrificans: RD1_1742
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Entry
RD1_1742 CDS
T00376
Name
(GenBank) type I secretion outer membrane protein, TolC family, putative
KO
K12340
outer membrane protein
Organism
rde
Roseobacter denitrificans
Pathway
rde01501
beta-Lactam resistance
rde01503
Cationic antimicrobial peptide (CAMP) resistance
rde02020
Two-component system
rde03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RD1_1742
09132 Signal transduction
02020 Two-component system
RD1_1742
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RD1_1742
01503 Cationic antimicrobial peptide (CAMP) resistance
RD1_1742
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_1742
02044 Secretion system [BR:
rde02044
]
RD1_1742
01504 Antimicrobial resistance genes [BR:
rde01504
]
RD1_1742
Transporters [BR:
rde02000
]
Other transporters
Pores ion channels [TC:
1
]
RD1_1742
Secretion system [BR:
rde02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
RD1_1742
RTX toxin transporter
RD1_1742
Multiple protein transporter
RD1_1742
RaxAB-RaxC type I secretion system protein
RD1_1742
Antimicrobial resistance genes [BR:
rde01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
RD1_1742
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
RD1_1742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
TPR_Slam
TPR_11
Motif
Other DBs
NCBI-ProteinID:
ABG31363
RoseoBase:
RD1_1742
UniProt:
Q169I0
LinkDB
All DBs
Position
1670179..1671579
Genome browser
AA seq
466 aa
AA seq
DB search
MRKAAFSLGVVFALAGPAAQAETLADALASAYQNSGLLDQNRALLRAADEDVAGAVAALR
PILNFTANVTRNFGTARSTTNAGGIVSGLDSTQADVGLVASLLLYDGGAASLDVEAAKET
VLATRQRLISVEQQVLLRAVVAYLSVYANRDAVQLRQNNLRLLSEELRAAQDRFEVGEVT
RTDVAQAEASLAQARSGLATAQGDLQQAIEEYQNVIGRQPGQIVPPPQLPQIESDVEAAR
ALAVRIHPDLREAQHRVAASEINVQRARSALQPTISAVGSLGVTDDLESRDYRNSGTIGI
ELSQPIYRGGALSSSIRRAIASRDAELGNLHEVRKTISQDVGNAYAALAARRASLAASEE
RIRAARIAFRGVREEATLGARTTLDVLDAEQELLDAETARISDEANLYIAAYGVLDATGR
LTAQNLNLGVQQYDPTAYYNLAKDAPTTQSEQGRQLDRVLRSLQRN
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaagcggcattctcacttggcgttgtttttgcattggcaggaccggcagcgcag
gccgaaactctggcggatgctttggcatcggcctatcaaaacagcggcttgcttgatcag
aaccgggcgctgttgcgtgctgcggacgaagacgtggcaggtgccgtcgcggcactgagg
ccaattctgaatttcacggccaatgtcacccgtaactttggaacggcccggtccacgacc
aacgcgggtggcattgtctccgggctggacagtacgcaggccgacgtggggctggttgca
agtcttttgctatatgacggcggggcggcatcgctggacgtcgaggcggcaaaggaaacc
gtattggccacgcgccagcgcctgatcagtgtcgagcaacaagtgctgttgcgcgctgtc
gtggcctacctgagtgtctatgcgaaccgcgacgcggtgcaattgcgccagaacaacctg
cggcttctctccgaggaattgcgtgcggcacaggatcgctttgaggttggcgaggtgacg
cgcaccgacgttgcacaggccgaggccagcctcgcgcaggcgcgcagtggtttggcaacc
gcgcagggtgatttgcaacaggcgattgaggaatatcagaatgtgattggccgccagccc
ggtcagatcgtgccgccgccgcaattgccgcagattgaaagcgacgtggaggctgcgcgc
gcccttgcggtcaggatacatcccgatctgcgggaggctcagcaccgtgtggcagcctct
gaaatcaatgttcaacgcgcgcgatccgcgttgcagccgacgatttcggccgtcggcagt
ttgggcgtgaccgatgatctggaatcgcgtgactaccgcaactcgggtacgatcgggatc
gagctttcacaaccgatctatcgcggcggcgcgctcagctcttcaatccgtcgcgcgatc
gcatcgcgtgatgctgaactgggcaacctgcatgaggtgcgcaaaacgatttcacaggac
gtgggcaacgcctatgccgcattggccgcgcgtcgtgccagccttgcggcgagtgaagag
cgtattcgcgccgcgcggatcgcgttccggggcgtgcgcgaagaggcaacgcttggcgcg
cggacaactcttgatgttctggatgccgagcaggaattgctggacgctgagacagcacgc
atatctgatgaggcaaacctttacatcgcggcctacggggtgctcgatgcgacgggcagg
ctgacggcccagaacctgaacctcggtgtgcagcagtatgatccgacggcctactacaat
ctcgccaaagatgcaccgaccacacagtcggagcagggccgccagcttgatcgggtattg
cgttcgctgcagcgaaattaa
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