KEGG   Roseobacter denitrificans: RD1_2509
Entry
RD1_2509          CDS       T00376                                 
Symbol
putA
Name
(GenBank) bifunctional PutA protein
  KO
K13821  RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
Organism
rde  Roseobacter denitrificans
Pathway
rde00250  Alanine, aspartate and glutamate metabolism
rde00330  Arginine and proline metabolism
rde01100  Metabolic pathways
rde01110  Biosynthesis of secondary metabolites
Module
rde_M00970  Proline degradation, proline => glutamate
Brite
KEGG Orthology (KO) [BR:rde00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00250 Alanine, aspartate and glutamate metabolism
    RD1_2509 (putA)
   00330 Arginine and proline metabolism
    RD1_2509 (putA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rde03000]
    RD1_2509 (putA)
Enzymes [BR:rde01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.1  With NAD+ or NADP+ as acceptor
    1.2.1.88  L-glutamate gamma-semialdehyde dehydrogenase
     RD1_2509 (putA)
  1.5  Acting on the CH-NH group of donors
   1.5.5  With a quinone or similar compound as acceptor
    1.5.5.2  proline dehydrogenase
     RD1_2509 (putA)
Transcription factors [BR:rde03000]
 Prokaryotic type
  Ribbon-helix-helix
   Other families
    RD1_2509 (putA)
SSDB
Motif
Pfam: Aldedh Pro_dh Pro_dh-DNA_bdg PRODH
Other DBs
NCBI-ProteinID: ABG32068
RoseoBase: RD1_2509
UniProt: Q166M5
LinkDB
Position
complement(2392900..2396319)
AA seq 1139 aa
MISALRQSVDEKTYADPDEIILEMISQTALTKTDRAQISAAAARLVDDIRNTTSPGLMEV
FLAEYGLSTDEGVALMCLAEALLRVPDPETIDALIEDKIAPSDWGRHLGHSASSLVNAST
WALMLTGRVLDDSHPGPVRQLRAALKRLGEPVIRTAVSRAMKEMGRQFVLGENINAAMER
AAGMEKKGFTYSYDMLGEAARTEADAKRYHLSYSRAISAIATACTDDDIRKNPGISVKLS
ALHPRYEVAQQEAVMSDLVPRLRALALLAKSAGMGLNVDAEEADRLGLSLDVIDCVMGEP
ALRGWDGFGIVVQAFGPRAGIVIDTLYEMAKRHDRKIMVRLVKGAYWDTEIKRAQVEGVE
GFPVFTQKAQTDVSYICNARKLLGMTDRIYPQFATHNAHTVAAILHMADDPQAYEFQRLH
GMGETLHTLVLQQNKTRCRIYAPVGAHRDLLAYLVRRLLENGANSSFVNQIVDEDVPAEV
VAADPFEKVITEPVAQIPSGPDLFAPERCNSRGFDLTHSQTLEALFEARDGFAKSAWQAA
PLLVSGETANDAPTEAVLNPADPSDRVGSVVWATAADVEAAFATATPWAAPPTERRRVLL
QAADLLEADHAQLFTLLTREAGKNLPDCVAELREAVDFLRFYASQATDAPCAGIFTCISP
WNFPLAIFLGQISAALAAGNAVLAKPAQQTPLIAHRAITLMYEAGVPRSALQLLPGAGDI
GALVTSDARIGGVAFTGSTATALRIRSAMAENCRPGTPLIAETGGLNAMIVDSTALPEQA
VQAIIESAFQSAGQRCSALRCLYVQEDIAPEFTKMLLGAMQCLTVADPWHLSTDVGPVID
AAARDGIAQHIAQARAEGRVIAETTAPATGTFIAPTLISVPGIAALEREIFGPVLHLATF
KAHQLDAVIDDINATGYGLTFGLHTRIDDRVQHVCERIAAGNVYINRNQIGAIVGSQPFG
GEGLSGTGPKAGGPHYLTRFLQADRKEVSEQWSQPQATLAPLTMDAPVTPHSSLSLPGPT
GESNRLSTLPRPALLCMGPGAQAAKEQARLVRALGGVALEAQGKIDPAALRDGPEYGGVL
WWGDAATGRAIEVAFAARQGPIIPLIPGAPDVARVLAERHVCVDTTASGGNAALLGAAA
NT seq 3420 nt   +upstreamnt  +downstreamnt
atgatctctgccttgcgccaaagcgttgatgaaaaaacctatgccgatcctgacgagatt
atcctggagatgatatcgcagaccgccctgaccaaaacagaccgtgcgcaaatcagtgca
gcggcggccaggctggtcgatgacattcgcaacaccaccagccccgggctgatggaggtt
ttcctcgcggaatatgggctgtccacggatgagggtgtcgcgctgatgtgtctggccgaa
gcgctgctgcgcgtgcctgatcccgaaacgattgatgcgctgatcgaggacaagatcgca
ccctccgattgggggcgtcatctggggcactctgcctccagccttgtcaatgcatctaca
tgggccctgatgctcaccgggcgggttctggatgacagccatccggggcccgtgcgccag
ttgcgcgccgcactcaaacgcctgggcgaacctgtcatccgcaccgccgtcagccgtgcc
atgaaagagatggggcggcagttcgtactgggagagaacattaatgccgccatggaacgt
gctgcaggcatggagaaaaaggggtttacctattcctatgacatgctgggggaagctgcc
cgcaccgaagccgatgcaaaacgctatcacctgagctacagccgcgcgatttccgcgatt
gccacggcctgcaccgacgacgacattcgcaagaaccccggtatttcggtcaaactctcc
gctctgcatccgcgttacgaagtcgcgcagcaagaggcggtgatgtccgaccttgtcccg
cggttgcgcgcgcttgcgcttctggcaaaatccgccggcatgggcctcaacgtggatgcc
gaagaggcggatcgccttggcctgtcgctcgacgtcatagactgcgtgatgggcgagccg
gcgctgcggggctgggatggctttggcatcgttgtgcaggcctttggaccgcgcgcgggc
attgtgattgatacgctctatgaaatggccaaacggcacgaccgcaaaatcatggtccgc
cttgtcaaaggggcctattgggacacggaaatcaaacgcgcgcaggtcgaaggcgttgaa
ggctttccagtgttcacgcagaaagcacaaaccgatgtctcctacatttgcaacgcccgc
aaactgcttggcatgaccgatcgcatctatccgcagtttgcgacccataacgcgcatacc
gtcgcggccatcctgcatatggcagatgacccgcaggcctatgaattccaacgcctgcat
gggatgggtgagacgctgcataccttggttttgcagcaaaacaagacgcgctgccggatt
tatgccccggttggtgcgcatcgcgacctcttggcctaccttgtgcgcaggctgttggaa
aacggggccaattcgagctttgtgaaccagatcgtggatgaagatgtcccggctgaggtt
gtggccgctgacccctttgaaaaggtgattacagagcctgtggcgcagattccgtccggc
cccgacctctttgcaccggagcgttgcaattcacgcgggttcgatctgacgcacagtcaa
acgctggaggcgctgttcgaggcgcgcgatggctttgccaagagcgcgtggcaggccgca
ccgctgctcgtctctggcgagaccgcgaatgatgctcccacggaggcggtcctcaatccc
gctgacccttcggatcgggtggggtcggtcgtctgggcaacggcggctgatgtcgaggct
gcctttgccacggcaacgccatgggcggccccccccacagagcggcggcgcgtgttattg
caggcggcggacctgctggaggccgatcacgcgcaactctttacgcttctcacccgcgag
gccggtaagaacctgccggattgcgttgcggaattgcgcgaggcggtggatttcctgcgc
ttttacgcatcacaggccaccgacgcaccatgtgcgggcatctttacctgcatttccccg
tggaacttcccgctggcgattttccttgggcagatcagcgcagcgcttgccgcaggcaat
gccgttctggccaaaccggcccagcagacacccttgatcgcccaccgcgccatcaccctc
atgtacgaggctggcgtgccgcgcagcgccctgcaactgctgccgggcgcgggagacatc
ggcgcgctggtcacctcggacgcccggatcggaggcgtggcctttaccggctccaccgcg
accgctttgcgcatccgcagcgccatggctgaaaactgccgtcccggcacgccgctgatc
gcggaaacaggcggtttgaacgcgatgatcgtggacagcaccgccctgcccgaacaagcc
gttcaggcgattatcgaaagcgcctttcaatccgccgggcagcggtgctctgccctgcgg
tgcctttatgttcaggaggacatcgcgcccgaattcaccaagatgctgttgggcgccatg
cagtgtctgaccgtggcggacccgtggcacctgtcaaccgatgtcggcccggtgatcgat
gcggcggcccgcgacggcatcgcgcagcacatcgcgcaggcccgcgcagaggggcgcgtc
attgcggaaaccaccgcgcctgcaaccggcaccttcattgcaccaaccctgatttccgtg
cccggcattgccgcgttggagcgtgagatctttggccccgtgctgcatttggccaccttc
aaggcgcaccagcttgatgcggtaatcgatgacataaacgcgacaggctacggtctgacc
tttggcctgcacacgcgtattgatgatcgcgtacaacatgtttgcgagcgcattgcggcg
ggcaatgtctatatcaaccgcaaccagatcggtgccatcgtgggtagtcagccctttggg
ggcgaaggtctgtcaggcaccgggccgaaggcgggtgggccgcactatctgacacgcttc
ttgcaagccgatcgcaaggaagtgtccgagcagtggtcacaaccgcaggcaacgcttgcg
ccgctgacgatggatgcacccgtgacgccgcatagctcgttgagcctgccgggaccgacc
ggcgagtccaaccgtctgagcaccttgccccggcctgcgctgttgtgcatgggccccggt
gcgcaagccgcaaaagaacaagcgcgcctcgtccgcgcattgggcggcgtggcccttgag
gcgcagggaaagatcgaccccgccgcattgcgcgatggcccggagtacggcggtgtcctg
tggtggggcgacgcggcgacaggacgcgccattgaggtcgcgtttgccgcgcgccaaggt
cccatcattcccctgatacccggcgcgccggatgttgcgcgggtgctggcggaacggcat
gtctgcgttgacacgacagcctctggcgggaacgccgctcttcttggggcggcggcgtga

KEGG   Roseobacter denitrificans: RD1_2848
Entry
RD1_2848          CDS       T00376                                 
Name
(GenBank) pyrroline-5-carboxylate reductase, putative
  KO
K00286  pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Organism
rde  Roseobacter denitrificans
Pathway
rde00330  Arginine and proline metabolism
rde01100  Metabolic pathways
rde01110  Biosynthesis of secondary metabolites
rde01230  Biosynthesis of amino acids
Module
rde_M00015  Proline biosynthesis, glutamate => proline
Brite
KEGG Orthology (KO) [BR:rde00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00330 Arginine and proline metabolism
    RD1_2848
Enzymes [BR:rde01000]
 1. Oxidoreductases
  1.5  Acting on the CH-NH group of donors
   1.5.1  With NAD+ or NADP+ as acceptor
    1.5.1.2  pyrroline-5-carboxylate reductase
     RD1_2848
SSDB
Motif
Pfam: F420_oxidored NAD_binding_2 2-Hacid_dh_C UDPG_MGDP_dh_N Sacchrp_dh_NADP Shikimate_DH NAD_binding_10 P5CR_dimer NmrA Pyr_redox XdhC_C 3HCDH_N CheD
Other DBs
NCBI-ProteinID: ABG32374
RoseoBase: RD1_2848
UniProt: Q165G9
LinkDB
Position
complement(2718710..2719468)
AA seq 252 aa
MTKIGFIGTGHIAAPMVRFLASRGHAVTVSERNAETAQSLKASHGVEVATNQVVLDCSQI
VFLCLRPHIAADVISGLRFSADHKVVSVMAGLPLRELAEICAPARDISMTIPLGYVEQGG
CPLPACPDDRVLRALFEPENPVLKVADEAAFNQHFAVCAFVPGVLDLMVTASDWLAQQTG
DADQAARYTHQLLAGFLAALPRTGGASLLADERDALATPGTLSLQMTDGLRSGGAHEALI
EALSAIGKRLEP
NT seq 759 nt   +upstreamnt  +downstreamnt
atgactaaaattggtttcatcggcaccggccatattgcggcgcctatggtccgctttctg
gcatcgcgcgggcacgccgtgaccgtgtctgagcgcaacgccgaaaccgcacaaagcctg
aaggcctcgcatggtgttgaggtggcgacaaatcaggtggtacttgattgctcgcagatc
gttttcttatgtctgcgcccgcatatcgctgccgatgtgatttccggtttgcgattctcg
gcggatcacaaggtggtgtcggtcatggcggggctgcctttgcgtgaactggccgagatc
tgcgcacccgcgcgcgatatttccatgacgatcccccttggctatgtcgagcagggcggt
tgccccttgcctgcgtgccctgacgacagggttttgcgcgcgttgttcgagccggaaaac
ccggttctgaaagtggcagatgaagcggcgttcaatcaacactttgccgtctgcgcattt
gtacccggcgtgctggacctgatggtgacagcctctgattggctggcgcagcagaccggg
gatgcggatcaggcggcgcgatacacccaccagttgctggcggggtttctggcggcgctg
ccccggacaggcggggcgtctttgcttgcggatgaacgggatgcgcttgcgacgccgggc
acactgagcctgcaaatgacagacgggctgcgttcgggtggggcgcatgaggcgctgatc
gaggcgctttctgccattggaaaacgcctcgaaccgtga

KEGG   Roseobacter denitrificans: RD1_3497
Entry
RD1_3497          CDS       T00376                                 
Symbol
proC
Name
(GenBank) pyrroline-5-carboxylate reductase, putative
  KO
K00286  pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Organism
rde  Roseobacter denitrificans
Pathway
rde00330  Arginine and proline metabolism
rde01100  Metabolic pathways
rde01110  Biosynthesis of secondary metabolites
rde01230  Biosynthesis of amino acids
Module
rde_M00015  Proline biosynthesis, glutamate => proline
Brite
KEGG Orthology (KO) [BR:rde00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00330 Arginine and proline metabolism
    RD1_3497 (proC)
Enzymes [BR:rde01000]
 1. Oxidoreductases
  1.5  Acting on the CH-NH group of donors
   1.5.1  With NAD+ or NADP+ as acceptor
    1.5.1.2  pyrroline-5-carboxylate reductase
     RD1_3497 (proC)
SSDB
Motif
Pfam: P5CR_dimer F420_oxidored
Other DBs
NCBI-ProteinID: ABG32981
RoseoBase: RD1_3497
UniProt: Q162W2
LinkDB
Position
complement(3364519..3365334)
AA seq 271 aa
MQDSRVATRGLVLLGCGKMGSAMLAGWLEAGLPASAVWVVEPNPSDWLVGTGVDLSGTLP
EAPAVVLVAVKPQMMAEALPLLKPMGNGDTLFISVAAGITLAAFEEILGAQTPIVRAMPN
TPAAISQGITAIVGNNAASAQHLAEAEALLQAVGEVVHVTDEGQIDAVTGVSGSGPAYVF
HMIETLAQAGQAQGLDAETAMRLAKATVAGAGALAMTSEETPEQLRINVTSPNGTTQAAL
EVLMDESTGFPSLMARAVKAAADRSRELANG
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcaagacagtcgggttgcaaccaggggccttgtgcttttgggttgtggaaaaatgggg
tcggccatgctggccggttggctggaggcgggattacctgccagtgccgtctgggtggtg
gaaccaaacccctcggactggctggtcggcaccggcgtagacctcagcgggaccctgcca
gaggcccccgccgttgttctggtcgccgtcaagccgcaaatgatggccgaggcgctgccg
cttttaaagcccatgggaaatggtgatacgcttttcatcagcgttgctgccggcataaca
ctggctgcttttgaagagattttgggcgcacagacgccgatcgtgcgcgccatgccgaat
acaccggcggccatatcccaaggcatcaccgcaatcgtgggcaacaatgccgccagcgcg
cagcacctggctgaggctgaggcccttttgcaggcggtgggcgaagtcgtgcatgtcacg
gatgagggccagattgacgccgtcacgggtgtcagcggctcgggccctgcatatgtgttt
cacatgatcgaaacgctggcgcaggccgggcaggcgcaagggctggatgctgaaacggcc
atgcggcttgccaaggcgacggttgccggggcgggtgcgctggcgatgacctctgaagag
acacccgaacagctgcgcatcaatgtgacgtcgccgaacgggaccacacaggccgcgctg
gaagtcttgatggatgaaagcaccggtttcccgtccctgatggcgcgcgccgtcaaagcc
gctgccgacagatcgcgggaacttgccaatggctga

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