KEGG   PATHWAY: rhoo02010
Entry
rhoo02010                   Pathway                                
Name
ABC transporters - Rhodococcus sp. DN22
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
rhoo02010  ABC transporters
rhoo02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Rhodococcus sp. DN22 [GN:rhoo]
Gene
RA302_00095  [KO:K25286]
RA302_00575  [KO:K09813]
RA302_00580  [KO:K09814] [EC:7.6.2.-]
RA302_00825  [KO:K25286]
RA302_00835  [KO:K25286]
RA302_01315  [KO:K09690]
RA302_01325  [KO:K09691] [EC:7.5.2.14]
RA302_01620  [KO:K25286]
RA302_01625  [KO:K23186]
RA302_01630  [KO:K23187]
RA302_01635  [KO:K23188]
RA302_01810  [KO:K18887]
RA302_01815  [KO:K18888]
RA302_02420  [KO:K25286]
RA302_02610  [KO:K11959]
RA302_02625  [KO:K15580]
RA302_02630  [KO:K15581]
RA302_02635  [KO:K15582]
RA302_02640  [KO:K10823 K15583]
RA302_03605  [KO:K02067]
RA302_03610  [KO:K02067]
RA302_03615  [KO:K02067]
RA302_03620  [KO:K02067]
RA302_03625  [KO:K02067]
RA302_03630  [KO:K02067]
RA302_03635  [KO:K02066]
RA302_03640  [KO:K02066]
RA302_03710  [KO:K25286]
RA302_04370  [KO:K02067]
RA302_04375  [KO:K02067]
RA302_04380  [KO:K02067]
RA302_04385  [KO:K02067]
RA302_04390  [KO:K02067]
RA302_04395  [KO:K02067]
RA302_04400  [KO:K02066]
RA302_04405  [KO:K02066]
RA302_04635  [KO:K02066]
RA302_04640  [KO:K02066]
RA302_04645  [KO:K02067]
RA302_04650  [KO:K02067]
RA302_04655  [KO:K02067]
RA302_04660  [KO:K02067]
RA302_04665  [KO:K02067]
RA302_04670  [KO:K02067]
RA302_04915  [KO:K25287]
RA302_04925  [KO:K25286]
RA302_04985  fepB; Fe2+-enterobactin ABC transporter substrate-binding protein [KO:K23185]
RA302_05005  [KO:K25286]
RA302_05050  [KO:K25286]
RA302_06770  [KO:K01999]
RA302_06775  [KO:K01997]
RA302_06780  [KO:K01995 K01998]
RA302_06785  [KO:K01996]
RA302_07160  [KO:K18888]
RA302_07165  [KO:K18887]
RA302_07710  [KO:K25286]
RA302_07795  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
RA302_07800  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
RA302_07805  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
RA302_07810  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
RA302_07815  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
RA302_07825  [KO:K01999]
RA302_07830  [KO:K01997]
RA302_07840  [KO:K01995]
RA302_07845  [KO:K01996]
RA302_08475  [KO:K01995]
RA302_08480  [KO:K01996]
RA302_08635  [KO:K02065]
RA302_08640  [KO:K02066]
RA302_08645  [KO:K02066]
RA302_08650  [KO:K02067]
RA302_08655  [KO:K02067]
RA302_08660  [KO:K02067]
RA302_08665  [KO:K02067]
RA302_08670  [KO:K02067]
RA302_08675  [KO:K02067]
RA302_11160  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
RA302_11165  ftsX; permease-like cell division protein FtsX [KO:K09811]
RA302_11430  [KO:K25286]
RA302_11965  [KO:K25286]
RA302_12195  [KO:K11082]
RA302_12200  [KO:K11083]
RA302_12205  [KO:K11084]
RA302_12210  [KO:K11081]
RA302_12320  [KO:K25286]
RA302_12780  [KO:K16785]
RA302_12850  [KO:K23185]
RA302_13060  [KO:K16783]
RA302_13065  [KO:K16784] [EC:7.6.2.-]
RA302_13070  [KO:K03523]
RA302_13115  [KO:K10007]
RA302_13120  [KO:K10006]
RA302_13125  [KO:K10005]
RA302_13130  gluA; glutamate ABC transporter ATP-binding protein GluA [KO:K10008] [EC:7.4.2.1]
RA302_13535  [KO:K25286]
RA302_14720  [KO:K23188]
RA302_14725  [KO:K23187]
RA302_14730  [KO:K23186]
RA302_15810  [KO:K01997]
RA302_15815  [KO:K01998]
RA302_15820  [KO:K01995]
RA302_15825  [KO:K01996]
RA302_15830  [KO:K01999]
RA302_15955  [KO:K02067]
RA302_15960  [KO:K02067]
RA302_15965  [KO:K02067]
RA302_15970  [KO:K02067]
RA302_15975  [KO:K02067]
RA302_15980  [KO:K02067]
RA302_15985  [KO:K02066]
RA302_15990  [KO:K02066]
RA302_16570  [KO:K25286]
RA302_17640  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
RA302_17645  [KO:K10229]
RA302_17650  [KO:K10228]
RA302_17655  [KO:K10227]
RA302_17995  [KO:K02045] [EC:7.3.2.3]
RA302_18000  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
RA302_18005  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
RA302_18010  [KO:K23163]
RA302_18025  [KO:K25286]
RA302_18245  [KO:K25286]
RA302_20020  [KO:K05845]
RA302_20025  [KO:K05845]
RA302_20030  [KO:K05847] [EC:7.6.2.9]
RA302_20035  [KO:K05846]
RA302_20040  [KO:K05846]
RA302_20105  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
RA302_20110  [KO:K10238]
RA302_20115  [KO:K10237]
RA302_20120  [KO:K10236]
RA302_20415  [KO:K25286]
RA302_21090  [KO:K14699] [EC:7.-.-.-]
RA302_21095  [KO:K14698] [EC:7.-.-.-]
RA302_21115  [KO:K25287]
RA302_21125  [KO:K23188]
RA302_21130  fepG; iron-enterobactin ABC transporter permease [KO:K23187]
RA302_21135  [KO:K23186]
RA302_21240  [KO:K10036 K10037]
RA302_21245  [KO:K10038] [EC:7.4.2.1]
RA302_21860  [KO:K01999]
RA302_21865  [KO:K01998]
RA302_21870  [KO:K01997]
RA302_21875  [KO:K01996]
RA302_21880  [KO:K01995]
RA302_22605  [KO:K25286]
RA302_22805  [KO:K02017] [EC:7.3.2.5]
RA302_22810  [KO:K02018]
RA302_22815  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
RA302_23250  [KO:K02067]
RA302_23505  pstB; phosphate ABC transporter ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
RA302_23510  pstA; phosphate ABC transporter permease PstA [KO:K02038]
RA302_23515  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
RA302_23520  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
RA302_23570  cydC; thiol reductant ABC exporter subunit CydC [KO:K16012]
RA302_23575  cydD; thiol reductant ABC exporter subunit CydD [KO:K16013]
RA302_23800  [KO:K10831] [EC:7.6.2.7]
RA302_23805  [KO:K15551]
RA302_23810  [KO:K15552]
RA302_23955  [KO:K05846]
RA302_23960  [KO:K05847] [EC:7.6.2.9]
RA302_23965  [KO:K05846]
RA302_23970  [KO:K05845]
RA302_24165  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
RA302_24170  [KO:K05813]
RA302_24175  [KO:K05815]
RA302_24180  [KO:K05814]
RA302_24700  [KO:K02073]
RA302_24705  [KO:K02071]
RA302_24710  [KO:K02072]
RA302_24985  [KO:K05845]
RA302_24990  [KO:K05846]
RA302_24995  [KO:K05846]
RA302_25000  [KO:K05847] [EC:7.6.2.9]
RA302_25025  [KO:K09814] [EC:7.6.2.-]
RA302_25030  [KO:K09813]
RA302_25630  [KO:K10440]
RA302_25635  [KO:K10441] [EC:7.5.2.7]
RA302_25640  [KO:K10439]
RA302_26095  [KO:K14699] [EC:7.-.-.-]
RA302_26100  [KO:K14698] [EC:7.-.-.-]
RA302_26315  [KO:K25287]
RA302_26560  [KO:K25286]
RA302_27635  [KO:K25286]
RA302_27730  [KO:K25286]
RA302_28070  [KO:K23188]
RA302_28075  [KO:K23187]
RA302_28080  [KO:K23186]
RA302_28085  fepB; Fe2+-enterobactin ABC transporter substrate-binding protein [KO:K23185]
RA302_28265  [KO:K25286]
RA302_28445  [KO:K15554]
RA302_28450  [KO:K15555] [EC:7.6.2.14]
RA302_28755  [KO:K15553]
RA302_28760  [KO:K15554]
RA302_28765  [KO:K15555] [EC:7.6.2.14]
RA302_28790  [KO:K15553]
RA302_28980  [KO:K10238]
RA302_28985  [KO:K10237]
RA302_28990  [KO:K10236]
RA302_28995  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
RA302_29570  [KO:K11959]
RA302_29705  [KO:K11602]
RA302_29710  [KO:K11603] [EC:7.2.2.5]
RA302_29715  [KO:K11601]
RA302_34120  [KO:K25286]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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