KEGG   PATHWAY: rmh02010
Entry
rmh02010                    Pathway                                
Name
ABC transporters - Roseivivax marinus
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
rmh02010  ABC transporters
rmh02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Roseivivax marinus [GN:rmh]
Gene
LVO79_00785  [KO:K12541]
LVO79_00975  [KO:K09812]
LVO79_00980  [KO:K09811]
LVO79_01460  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
LVO79_01465  modB; molybdate ABC transporter permease subunit [KO:K02018]
LVO79_01470  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
LVO79_01585  [KO:K01999]
LVO79_01590  [KO:K01997 K01998]
LVO79_01595  [KO:K01995]
LVO79_01600  [KO:K01996]
LVO79_02565  [KO:K02000] [EC:7.6.2.9]
LVO79_02570  [KO:K02001]
LVO79_02575  [KO:K02002]
LVO79_02585  [KO:K02002]
LVO79_02630  [KO:K11604]
LVO79_02635  [KO:K11607]
LVO79_02640  [KO:K11605]
LVO79_02645  [KO:K11606]
LVO79_02875  [KO:K10554]
LVO79_02880  [KO:K10553]
LVO79_02885  [KO:K10552]
LVO79_03900  [KO:K01996]
LVO79_03905  [KO:K01995]
LVO79_03915  [KO:K01997]
LVO79_03920  [KO:K01999]
LVO79_03980  [KO:K05773]
LVO79_03985  [KO:K06857] [EC:7.3.2.6]
LVO79_03990  [KO:K05772]
LVO79_04005  [KO:K02011]
LVO79_05325  [KO:K10823]
LVO79_05330  [KO:K15583]
LVO79_05335  [KO:K15582]
LVO79_05340  oppB; oligopeptide ABC transporter permease OppB [KO:K15581]
LVO79_05345  [KO:K15580]
LVO79_05445  [KO:K09808]
LVO79_05450  [KO:K09810] [EC:7.6.2.-]
LVO79_06150  [KO:K02010] [EC:7.2.2.7]
LVO79_06575  choW; choline ABC transporter permease subunit [KO:K02001]
LVO79_06580  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
LVO79_07060  fhuB; Fe(3+)-hydroxamate ABC transporter permease FhuB [KO:K23228]
LVO79_07065  [KO:K23227]
LVO79_07075  [KO:K10829] [EC:7.2.2.16]
LVO79_07230  [KO:K15576]
LVO79_07235  [KO:K15577]
LVO79_07240  [KO:K15578] [EC:7.3.2.4]
LVO79_07415  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
LVO79_07420  ccmB; heme exporter protein CcmB [KO:K02194]
LVO79_07425  [KO:K02195]
LVO79_07430  ccmD; heme exporter protein CcmD [KO:K02196]
LVO79_07485  [KO:K03523]
LVO79_07615  [KO:K02012]
LVO79_07680  lptG; LPS export ABC transporter permease LptG [KO:K11720]
LVO79_07685  lptF; LPS export ABC transporter permease LptF [KO:K07091]
LVO79_07725  [KO:K10232]
LVO79_07730  [KO:K10233]
LVO79_07735  [KO:K10234]
LVO79_07745  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10235]
LVO79_08120  pstB; phosphate ABC transporter ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
LVO79_08125  pstA; phosphate ABC transporter permease PstA [KO:K02038]
LVO79_08130  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
LVO79_08135  [KO:K02040]
LVO79_09185  [KO:K17321]
LVO79_09195  [KO:K17323]
LVO79_09200  [KO:K17322]
LVO79_09205  [KO:K17325]
LVO79_09210  [KO:K17324]
LVO79_09790  choX; choline ABC transporter substrate-binding protein [KO:K02002]
LVO79_09850  [KO:K24821]
LVO79_10370  [KO:K10545] [EC:7.5.2.10]
LVO79_10375  [KO:K10544]
LVO79_10380  xylF; D-xylose ABC transporter substrate-binding protein [KO:K10543]
LVO79_10415  [KO:K11085] [EC:7.5.2.6]
LVO79_11180  [KO:K01998]
LVO79_11185  [KO:K01997]
LVO79_11195  [KO:K01996]
LVO79_11200  [KO:K01995]
LVO79_11205  [KO:K01999]
LVO79_11475  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
LVO79_12015  [KO:K11074]
LVO79_12020  [KO:K11075]
LVO79_12025  [KO:K11076] [EC:7.6.2.16]
LVO79_12030  [KO:K11073]
LVO79_12145  [KO:K02067]
LVO79_12150  [KO:K02065]
LVO79_12155  [KO:K02066]
LVO79_12460  [KO:K23537]
LVO79_12465  [KO:K23535]
LVO79_12470  [KO:K23536]
LVO79_12475  [KO:K07335]
LVO79_12895  [KO:K07335]
LVO79_12900  [KO:K23537]
LVO79_12905  [KO:K23535]
LVO79_12910  [KO:K23536]
LVO79_12930  [KO:K02064]
LVO79_12935  [KO:K02063]
LVO79_12940  [KO:K02062] [EC:7.6.2.15]
LVO79_13075  [KO:K01996]
LVO79_13080  [KO:K01995]
LVO79_13085  [KO:K01998]
LVO79_13090  [KO:K01997]
LVO79_13095  [KO:K01999]
LVO79_14160  [KO:K13893]
LVO79_14165  [KO:K13894]
LVO79_14170  [KO:K13895]
LVO79_14175  [KO:K13896]
LVO79_14440  [KO:K01996]
LVO79_14445  [KO:K01999]
LVO79_14450  [KO:K01998]
LVO79_14465  [KO:K01997]
LVO79_14470  [KO:K01995]
LVO79_14530  [KO:K10227]
LVO79_14535  [KO:K10228]
LVO79_14540  [KO:K10229]
LVO79_14545  [KO:K10111] [EC:7.5.2.-]
LVO79_14560  [KO:K09815]
LVO79_14570  [KO:K09817] [EC:7.2.2.20]
LVO79_14575  [KO:K09816]
LVO79_14750  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
LVO79_14815  [KO:K09972] [EC:7.4.2.1]
LVO79_14820  [KO:K09971]
LVO79_14825  [KO:K09970]
LVO79_14830  [KO:K09969]
LVO79_14990  [KO:K09689] [EC:7.6.2.12]
LVO79_14995  [KO:K10107]
LVO79_15235  [KO:K18893]
LVO79_15785  [KO:K11069]
LVO79_15790  [KO:K11070]
LVO79_15795  [KO:K11071]
LVO79_15800  [KO:K11072] [EC:7.6.2.11]
LVO79_16180  [KO:K12372]
LVO79_16185  [KO:K12371]
LVO79_16190  [KO:K12370]
LVO79_16195  [KO:K12369]
LVO79_16205  [KO:K12368]
LVO79_17210  [KO:K09688]
LVO79_17215  [KO:K10107]
LVO79_17220  [KO:K09689] [EC:7.6.2.12]
LVO79_17800  [KO:K02040]
LVO79_17985  [KO:K12536]
LVO79_18085  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
LVO79_18090  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
LVO79_18095  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
LVO79_18100  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
LVO79_18105  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
LVO79_19795  [KO:K10439]
LVO79_19800  [KO:K10440]
LVO79_19805  [KO:K10441] [EC:7.5.2.7]
LVO79_19870  [KO:K10440]
LVO79_19875  [KO:K10441] [EC:7.5.2.7]
LVO79_19910  [KO:K10823]
LVO79_20310  [KO:K16961]
LVO79_20315  [KO:K16962]
LVO79_20320  [KO:K16963]
LVO79_20460  phnD; phosphate/phosphite/phosphonate ABC transporter substrate-binding protein [KO:K02044]
LVO79_20465  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
LVO79_20470  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
LVO79_20475  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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