Rattus norvegicus (rat): 300339
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Entry
300339 CDS
T01003
Symbol
Mmp1
Name
(RefSeq) interstitial collagenase precursor
KO
K01388
matrix metalloproteinase-1 (interstitial collagenase) [EC:
3.4.24.7
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03320
PPAR signaling pathway
rno04657
IL-17 signaling pathway
rno04926
Relaxin signaling pathway
rno05171
Coronavirus disease - COVID-19
rno05200
Pathways in cancer
rno05219
Bladder cancer
rno05323
Rheumatoid arthritis
rno05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04657 IL-17 signaling pathway
300339 (Mmp1)
09152 Endocrine system
03320 PPAR signaling pathway
300339 (Mmp1)
04926 Relaxin signaling pathway
300339 (Mmp1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
300339 (Mmp1)
09162 Cancer: specific types
05219 Bladder cancer
300339 (Mmp1)
09172 Infectious disease: viral
05171 Coronavirus disease - COVID-19
300339 (Mmp1)
09163 Immune disease
05323 Rheumatoid arthritis
300339 (Mmp1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
300339 (Mmp1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rno01002
]
300339 (Mmp1)
Enzymes [BR:
rno01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.7 interstitial collagenase
300339 (Mmp1)
Peptidases and inhibitors [BR:
rno01002
]
Metallo peptidases
Family M10
300339 (Mmp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Metallopep
Reprolysin_5
DUF4953
Reprolysin_3
Reprolysin_4
Peptidase_M54
Motif
Other DBs
NCBI-GeneID:
300339
NCBI-ProteinID:
NP_001128002
RGD:
1307917
Ensembl:
ENSRNOG00000032353
UniProt:
B5DFD5
LinkDB
All DBs
Position
8:12943453..12963966
Genome browser
AA seq
464 aa
AA seq
DB search
MLSLPLLLLLLATSSYSFPVFQDGARQNVETVWKYLENYYNLGEDVQAKNVDAKEVMAEK
LRQMQQLFGLKVTGNSNSETLSAMRKPRCGVPDVAPYAITHNNPRWTKTHLTYSILNYTP
YLPKEVIENAIERAFKVWSDVTPLTFERVFEEEGDIVFAFYRGDHSDNNPFDGPEYGLAH
TFPPGPRLGGDVHYDLDETWTDNSDNFNLFYVTAHELGHSLGLTHSRDVGALMFPSYTWY
TEDFVLNQEDINRIQALYGPSPNPIQPTGATTPHPCDGDLTFDAITTFRGEVMFFKGRFY
IRVNKFMPEAELNLIGIIWPNLPGKLDAAYEVSMIDQVRYFKGNKVWVVREHTVLRGFPT
DIHSFFGFPSSVTHIDAAVCEEETGKTYFFVDNMYWRYDENTQSMDPGYPRLTAEDFPGI
DDKVDDVFQKGENFYFFHQSVQRRFSLRIRRVDDSRDSSTWFNC
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgcttagccttcctttgctgttgcttctcttggctaccagctcatacagtttccccgtg
tttcaggacggagcccggcagaatgtggaaacagtctggaaatacctggaaaactactac
aacttgggtgaagacgtccaagctaaaaacgtggatgccaaggaggtgatggctgaaaag
ctgaggcaaatgcagcagttatttgggctgaaagtgacaggaaattcaaattctgaaacc
ctgagtgctatgaggaaacctaggtgtggggtgcctgatgtggccccatatgccattact
cacaacaatcctcgttggaccaaaacacatctgacttacagcattttaaactacacacca
tatttgccaaaagaagttatagaaaacgccatcgagagagcctttaaagtctggagtgat
gtgacaccactaacattcgaaagggtttttgaggaggaaggtgatattgtgttcgccttc
tacagaggagaccatagtgacaataacccatttgatggacctgaatatggacttgctcac
acattcccaccaggcccacgtttggggggcgatgttcattatgatctggatgagacgtgg
accgacaacagtgacaatttcaatttgttctatgttacggctcatgaactgggccactcc
cttggactcactcattctagagatgtaggagcactaatgttccccagctacacatggtac
actgaagactttgtgctaaaccaggaggatattaatcgcatccaggctttatatgggcct
tccccaaatcccatccagccaacaggtgcaacaacaccacatccatgtgatggtgatcta
accttcgacgctataactacgtttaggggagaggtgatgttctttaaaggcaggttctac
attcgtgtaaataagttcatgccagaagctgagctcaatttgataggtattatctggcca
aatctgccaggtaaacttgatgctgcttatgaagttagtatgatagatcaagtccgctat
ttcaaaggcaataaagtctgggttgttcgagagcatactgtactgagaggattccccaca
gacatccatagcttctttggcttccctagcagtgtgacacacattgacgctgccgtttgt
gaggaagagactggaaaaacatacttcttcgttgacaacatgtactggaggtatgatgaa
aatacacagtccatggatccaggttatcctagattaacagcagaagatttccctggaatt
gacgataaagttgatgatgttttccaaaaaggcgaaaatttctacttctttcaccaatca
gttcaacgcagatttagcctccgaataagaagagttgatgactcccgtgattctagtacc
tggttcaactgctaa
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