KEGG   PATHWAY: rpa00920
Entry
rpa00920                    Pathway                                
Name
Sulfur metabolism - Rhodopseudomonas palustris CGA009
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rpa00920  Sulfur metabolism
rpa00920

Module
rpa_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rpa00920]
rpa_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rpa00920]
rpa_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:rpa00920]
Other DBs
GO: 0006790
Organism
Rhodopseudomonas palustris CGA009 [GN:rpa]
Gene
TX73_003875  sulfate ABC transporter substrate-binding protein [KO:K23163]
TX73_003870  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
TX73_003865  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
TX73_003860  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
TX73_004555  ABC transporter substrate-binding protein [KO:K15553]
TX73_006995  ABC transporter substrate-binding protein [KO:K15553]
TX73_010525  ABC transporter substrate-binding protein [KO:K15553]
TX73_013505  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
TX73_013530  sulfonate ABC transporter substrate-binding protein [KO:K15553]
TX73_013555  ABC transporter substrate-binding protein [KO:K15553]
TX73_013585  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
TX73_013620  ABC transporter substrate-binding protein [KO:K15553]
TX73_004545  ABC transporter permease [KO:K15554]
TX73_007000  ABC transporter permease [KO:K15554]
TX73_010520  ABC transporter permease [KO:K15554]
TX73_013520  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
TX73_013580  ABC transporter permease [KO:K15554]
TX73_013625  ABC transporter permease subunit [KO:K15554]
TX73_004550  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
TX73_007005  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
TX73_010515  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
TX73_013515  ATP-binding cassette domain-containing protein [KO:K15555] [EC:7.6.2.14]
TX73_013575  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
TX73_013630  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
TX73_013525  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
TX73_003890  cysC; adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
TX73_003885  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
TX73_008350  3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
TX73_003880  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
TX73_023200  soxA; sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
TX73_023205  soxX; sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
TX73_023195  soxY; thiosulfate oxidation carrier protein SoxY [KO:K17226]
TX73_007015  thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
TX73_023190  soxZ; thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
TX73_023185  soxB; thiosulfohydrolase SoxB [KO:K17224] [EC:3.1.6.20]
TX73_023180  soxC; sulfite dehydrogenase [KO:K17225]
TX73_023175  cytochrome c [KO:K22622] [EC:1.8.2.6]
TX73_019225  sulfite reductase subunit alpha [KO:K00380] [EC:1.8.1.2]
TX73_021840  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
TX73_023155  NAD(P)/FAD-dependent oxidoreductase [KO:K17229] [EC:1.8.2.3]
TX73_023160  FCSD flavin-binding domain-containing protein [KO:K17229] [EC:1.8.2.3]
TX73_018725  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
TX73_007315  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
TX73_017735  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
TX73_002885  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
TX73_013280  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
TX73_023840  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
TX73_023025  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
TX73_024775  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
TX73_014400  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
TX73_023060  fatty-acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
TX73_004210  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
TX73_004935  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
TX73_009185  crotonase/enoyl-CoA hydratase family protein [KO:K20036] [EC:4.2.1.155]
TX73_014680  isoprenylcysteine carboxylmethyltransferase family protein [KO:K21310] [EC:2.1.1.334]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rpa00260  Glycine, serine and threonine metabolism
rpa00270  Cysteine and methionine metabolism
rpa00680  Methane metabolism
rpa00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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