KEGG   PATHWAY: rrt00920
Entry
rrt00920                    Pathway                                
Name
Sulfur metabolism - Rhodococcus rhodochrous
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rrt00920  Sulfur metabolism
rrt00920

Module
rrt_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rrt00920]
rrt_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rrt00920]
Other DBs
GO: 0006790
Organism
Rhodococcus rhodochrous [GN:rrt]
Gene
4535765_00070  ssuB_1; ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
4535765_00071  ssuC_1; ABC transporter permease [KO:K15554]
4535765_00073  ssuA_1; ABC transporter substrate-binding protein [KO:K15553]
4535765_00385  ssuD_1; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
4535765_00387  sseA_1; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4535765_00791  [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4535765_00902  ssuA_2; ABC transporter substrate-binding protein [KO:K15553]
4535765_00903  ssuC_3; ABC transporter permease [KO:K15554]
4535765_00904  ssuB_2; ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
4535765_01157  metB; cystathionine beta and gamma-lyase/cystathionine gamma-synthase metb [KO:K01739] [EC:2.5.1.48]
4535765_01578  sseA_2; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4535765_01591  ssuE_1; FMN reductase [KO:K00299] [EC:1.5.1.38]
4535765_01596  ssuC_5; ABC transporter transmembrane protein [KO:K15554]
4535765_01597  ssuB_4; ABC transporter ATPase [KO:K15555] [EC:7.6.2.14]
4535765_01598  ssuA_3; ABC transporter substrate-binding protein [KO:K15553]
4535765_01614  cysJ; sulfite reductase [NADPH] flavoprotein alpha-component [KO:K00380] [EC:1.8.1.2]
4535765_01651  sseA_3; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4535765_01670  cysD_1; sulfate adenylyltransferase subunit 2 cysd [KO:K00957] [EC:2.7.7.4]
4535765_01671  cysNC_1; sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase cysnc [KO:K00955] [EC:2.7.7.4 2.7.1.25]
4535765_01672  cysQ; 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase [KO:K01082] [EC:3.1.3.7]
4535765_01972  nrnA; phosphoesterase [KO:K06881] [EC:3.1.3.7 3.1.13.3]
4535765_02809  ssuE_2; oxidoreductase [KO:K00299] [EC:1.5.1.38]
4535765_03113  sir; sulfite reductase [KO:K00392] [EC:1.8.7.1]
4535765_03114  cysH; phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
4535765_03115  cysD_2; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
4535765_03116  cysNC_2; sulfate adenylyltransferase large subunit [KO:K00956] [EC:2.7.7.4]
4535765_03120  cysA_1; sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
4535765_03121  cysW_1; sulfate ABC transporter permease protein [KO:K02047]
4535765_03122  cysW_2; sulfate ABC transporter permease [KO:K02046]
4535765_03123  sbp; sulfate/thiosulfate ABC transporter substrate-binding protein [KO:K23163]
4535765_03378  sseA_4; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4535765_03434  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
4535765_03667  cysK; cysteine synthase [KO:K01738] [EC:2.5.1.47]
4535765_03882  metZ; cystathionine gamma-synthase [KO:K10764] [EC:2.5.1.-]
4535765_04217  cysE; serine o-acetyltransferase [KO:K00640] [EC:2.3.1.30]
4535765_04218  cysK_M; cysteine synthase cysk/m [KO:K01738] [EC:2.5.1.47]
4535765_04767  ssuA_4; ABC transporter substrate-binding protein [KO:K15553]
4535765_04768  ssuB_6; ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
4535765_04769  ssuC_6; ABC transporter permease [KO:K15554]
4535765_04877  ssuD_2; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
4535765_04906  narB_2; nitrate/sulfite reductase [KO:K00380] [EC:1.8.1.2]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00163  Propanoate
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rrt00260  Glycine, serine and threonine metabolism
rrt00270  Cysteine and methionine metabolism
rrt00640  Propanoate metabolism
rrt00680  Methane metabolism
rrt00720  Other carbon fixation pathways
KO pathway
ko00920   

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