Salicibibacter kimchii: DT065_02930
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Entry
DT065_02930 CDS
T05571
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rue
Salicibibacter kimchii
Pathway
rue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DT065_02930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rue03019
]
DT065_02930
03009 Ribosome biogenesis [BR:
rue03009
]
DT065_02930
Enzymes [BR:
rue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DT065_02930
Messenger RNA biogenesis [BR:
rue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DT065_02930
Ribosome biogenesis [BR:
rue03009
]
Prokaryotic type
rRNA helicases
DT065_02930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_30
Helicase_RecD
Flavi_DEAD
PRD1_P5_spike_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXF55070
UniProt:
A0A345BVT9
LinkDB
All DBs
Position
complement(549846..551459)
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AA seq
537 aa
AA seq
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MNVFESEHIKPEVKKAIKEIGFEEPSPIQEQAIPKALDDKDVIGQAQTGTGKTAAFGIPL
LTKLNATSHVQALVLTPTRELAIQVAGELQKLSTHLHVTTLPVYGGQSIGHQIKALKRGV
QVVIGTPGRVKDHLRRKTLKLDQVQTLVLDEADEMLDMGFIEDIESILKQTNEDRQTMLF
SATMPDPIRKLSRRYMKQPETVSISKGDVTAPSIEQLYFKVLEKNKLESLCRVIDRYNPA
LAIVFCRTKKGVAELSESLQARGYFADGLHGDLNQSQRDAVMKRFRESTIEYLVATDVAA
RGLDVQNVTHVINYDIPQDPESYVHRIGRTGRAGKSGQALTLVTPREMKHLRSIEKEIKM
SLPTRDIPTLEEVVEKQQDSWRQQITGVIEHSEETSIFDELTLELLEQYQPREIIDALLK
MNYQTENNISEEGYYFGDTGAAKGMVRFFMNVGRNVSLTPKILVDEIADAVGISKKSIGR
IDLFEKFTFVEVPEDVAPFVYEGLRHSRLNGARVNLEPAKPKPKRRERRPSNPSVSS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtatttgaaagtgaacatattaaaccggaagtgaaaaaagccattaaggagata
ggctttgaagagccttctccgattcaggagcaagcgataccaaaagcactggatgacaaa
gatgtgattgggcaagcgcaaacggggaccggaaagacggcagccttcgggattcctctg
cttacaaaactgaacgccacctcacacgttcaggcgctcgttttaacgccaacccgagaa
cttgccatccaagtggccggggaattacaaaagctttctacgcacttgcatgtcacaacg
ctgcctgtctatggcgggcaatcgatcggccaccagatcaaagcgcttaaacgtggggtg
caagtcgttatcgggacccccgggcgcgtgaaagatcatttgaggagaaaaacgttaaag
cttgatcaagtgcagacgcttgtcttggatgaagcggatgaaatgcttgacatgggcttt
atcgaagatattgaatcgattctgaaacaaacgaatgaggaccggcaaacgatgctgttt
tcagccacgatgcccgatccgattcgcaaactttcccgtcgctacatgaaacaacctgaa
actgtgtccatcagcaaaggcgatgtcacagccccctcgattgaacagctttattttaaa
gtgcttgaaaagaataaacttgaatcgctttgccgggtcatcgaccgctacaatccggca
ctcgcgattgttttttgccgcacgaaaaaaggcgttgcagaattatcggaatccttgcag
gcacgggggtatttcgccgacggcctccacggtgatttgaaccaatcacagcgggatgcg
gtcatgaaaaggtttcgagaaagcacgattgagtatcttgtcgcgacggatgttgctgct
cgcggattggatgtccaaaacgtaacgcacgtaataaactatgatatcccgcaagatccg
gaatcctatgtccatcgtatcgggcgaaccgggcgtgccggcaagagtggccaagcgctt
acgcttgtcactccgcgggaaatgaagcatttacgttcgattgaaaaagaaataaagatg
tccttgccaacacgagatatcccgactttggaagaagtggtagagaaacagcaggactcg
tggcgacagcaaatcacaggcgtcattgaacatagcgaagagacgtcgatctttgatgaa
ttaaccttggaactgcttgagcagtatcaaccacgggaaatcattgatgcgctgttgaaa
atgaactatcaaacagaaaataacatctccgaagaagggtattattttggagataccggc
gcggcaaaaggcatggtccgtttctttatgaacgtgggccgcaatgtgagcctaactccg
aaaatactcgttgatgaaatagctgatgctgtcgggatttcaaaaaaatcgatcggtcgc
atcgatcttttcgaaaaatttacgttcgtggaagtcccggaagatgtggctccttttgtt
tatgaaggattgcgccactcccgtttaaacggtgcgcgcgtgaacctggagccggcaaaa
ccaaaaccgaaacgccgtgagcgtcgaccatcaaacccatcggtctctagctaa
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