Salicibibacter kimchii: DT065_09645
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Entry
DT065_09645 CDS
T05571
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rue
Salicibibacter kimchii
Pathway
rue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DT065_09645 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rue03019
]
DT065_09645 (rnr)
03016 Transfer RNA biogenesis [BR:
rue03016
]
DT065_09645 (rnr)
Enzymes [BR:
rue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DT065_09645 (rnr)
Messenger RNA biogenesis [BR:
rue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DT065_09645 (rnr)
Transfer RNA biogenesis [BR:
rue03016
]
Prokaryotic type
tRNA degradation factors
DT065_09645 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AXF56252
UniProt:
A0A345BZ71
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All DBs
Position
complement(1898349..1900643)
Genome browser
AA seq
764 aa
AA seq
DB search
MKRMVEETIEPVLTHIRDEAKKPVTVHELQEALQMDSAKDRKDLMKTLNHLEDNGQLIRT
RNNRYGIPEKMNLLKGTVQAHRKGFAFILPEESGHNDVYVAPGDLAGAMNRDTVFVRIHS
RSGGQSGDRAEGAVVRILERGTTRVVGTFLDYERYGFVKPDDKRLHEDVFIPKGQEHGAA
DGHKVVIELTKYPEGRMGAEGVVATILGHKNDPGTDILSIIHKHELPGAFPEEVQAQAAG
APDEIQTEEIERRHDLREETIVTIDGADAKDLDDAVTVKRLDNGNYRLGVHIADVSYYVE
EGSAIDAEAEDRGTSSYLVDRVIPMIPHRLSNGICSLNPRVDRLTISCEMEISPEGDVVD
HDIFESVIRSSARMTYTEVKEILVDQNEETREQFRSLVPLFEEMEALAAILRNKRFERGA
IDFDFKEAEVEMENDGHPTDVRIIERSIAERLIEEFMLAANETIAEHFHWLKLPFIYRIH
EDPAEDKLQSFLEFITSFGYVMKGRSDSIHPGALQEVLQSVKGEAEETVINTVMLRSMQQ
AKYDPTNIGHFGLAADFYTHFTSPIRRYPDLIVHRLIRTYLVQNKTGKKTVDHWQGRLPD
IAKHSSARERRSVDAERDVDDLKKAEFMKDKIGEEFPAFVSGAANFGLFIRLENTIEGLV
HVSHLTDDYYHYDERQYALIGERTANMFRIGDRVDVRVLDVNMDEPSIDFEIVGMPERKK
QKPREGPKVIQGERGRPKDHKPPKNKAKGKGNGKKGKKKKNKSQ
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcatggttgaagaaacgatagaaccggtgcttacccatattcgtgatgaagca
aaaaagccggtgaccgtccatgaattgcaagaagctttacaaatggattcggccaaagat
cgaaaagacttaatgaaaacgttgaaccatttggaagacaacggccagttaatccgtacg
cgcaacaatcgctacggtatccctgaaaaaatgaacttgcttaaagggacggtacaagct
catcgtaaaggttttgcttttatattgcctgaagaatcagggcataatgacgtgtacgtt
gcccccggtgacctggccggtgccatgaacagagatactgtctttgtgcgtattcattcc
cgctcgggaggacaatctggcgatcgggccgaaggcgcagtcgttcgcattcttgaacgt
ggaaccacccgagtggtcggaacgttcctcgattatgagcgttatggatttgttaagccg
gatgataaacgtttacacgaagatgtttttattccaaaaggccaggagcacggtgctgct
gacgggcataaagtcgtaattgaacttacgaaatatccggaaggtcgtatgggggctgaa
ggagtagtagctacgatacttggccataaaaatgacccagggaccgatattttgtcgatt
attcataaacatgaactaccgggagcgtttccggaagaagtacaggcacaagctgctggt
gcgcctgacgaaattcaaacggaggaaatcgagcgccgccatgatttgcgggaagaaacg
attgttaccatcgatggcgccgatgccaaggaccttgacgatgctgtaaccgtgaagcgt
ttggataacggcaattatcgtctcggtgttcatattgccgatgtcagctattatgtggaa
gaaggttctgccattgatgcggaagccgaagaccgtgggacgagttcatacctcgtagat
cgtgtcattccgatgatcccgcaccggttgtccaatggaatctgttccttgaacccgaga
gtggaccggcttaccatttcctgtgaaatggaaatcagccctgaaggggacgtcgtcgat
catgacatttttgaaagtgtgatccgctcctctgctcgcatgacgtacacagaagtaaaa
gaaatccttgtcgatcaaaacgaagagacgagagaacaatttcgatccctcgtgcctctt
tttgaggagatggaagcgttagccgccattttacgaaacaaacgttttgaacgtggagcg
atcgattttgacttcaaggaagcggaagttgagatggagaatgacggccatcccacagat
gtccgtatcatcgaacgttccattgccgagcggttaattgaagaatttatgctagcagca
aatgaaaccattgccgagcattttcattggttgaagctcccgtttatttaccgtattcat
gaagatccggccgaggataaattgcaaagttttctcgagtttattacgagcttcggctat
gtgatgaaaggacgcagcgactccattcatcctggggcgctgcaggaagtactgcagtcc
gtaaagggggaagcagaagaaacggtcattaatacggtcatgttgcgttccatgcaacaa
gccaaatacgatccaaccaatatcggacactttggattggctgcagatttctatacacac
ttcacatctccgattcgccgctatccggatttaattgtgcatcgtttgattcgcacgtac
ttggtacaaaacaagaccggcaaaaaaacggtggaccattggcaagggcggcttccggat
atcgccaaacattcgtcggccagggaacgccgttccgtggatgccgaacgggatgtagat
gatttaaaaaaagcagagtttatgaaagacaagatcggtgaagagtttccggcctttgta
agcggagcagccaattttggcttgtttatccgtttggagaacacaatcgaaggccttgtc
cacgtcagtcatttaaccgatgattattatcattacgacgagcgacagtatgccctcatc
ggggaacgaaccgcgaacatgtttcgcattggcgaccgtgtcgatgtccgtgtcctcgat
gtcaacatggacgagccgtcaattgattttgaaatcgtgggcatgccggagcggaaaaaa
caaaaacctcgagaagggccgaaagttattcaaggggagcgggggcgccccaaagatcac
aaacctccgaagaataaggctaaaggcaaaggcaacggtaaaaaaggaaagaaaaagaaa
aacaaaagtcaatga
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