Salicibibacter kimchii: DT065_17280
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Entry
DT065_17280 CDS
T05571
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rue
Salicibibacter kimchii
Pathway
rue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DT065_17280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rue03019
]
DT065_17280
03009 Ribosome biogenesis [BR:
rue03009
]
DT065_17280
Enzymes [BR:
rue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DT065_17280
Messenger RNA biogenesis [BR:
rue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DT065_17280
Ribosome biogenesis [BR:
rue03009
]
Prokaryotic type
rRNA helicases
DT065_17280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXF57565
UniProt:
A0A345C2Y4
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All DBs
Position
3401675..3403114
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AA seq
479 aa
AA seq
DB search
MKFEELDLPPYLLKSVQSMGFTEATSIQEKILPVARKGRDVIGQAQTGTGKTAAFALPII
EKVDPEDPNVQALILTPTRELAVQVSEEVNRLGRTKNVKSVAVYGGADMGRQIRELKSRP
PIIVATPGRYMDHTRRRTIRPQAVSTVVLDEADEMLSMGFIEDIETILEAIPNERQTLLF
SATMPSRLKKVADRFMTEPQTVSVKAKAMTVSNIEQFALKVPEKQKLSVLGRLLDFEDPD
LAIIFGRTKRRVDELSEALEHQGYAAAGLHGDMKQAGRTNVLHRFKQGAIKYLVATDVAA
RGIDVTGVTHVFNFDLPQDAESYVHRIGRTGRAGHSGKSYTFAAPVEMDHMAMIEKATKG
SIKHIDVPSEHEADIARQERAAHQLKNIIEKEEHTGLEPMAEKLLEEHDQVTVVAAALSM
LQKDKKEPVKKLTGERPIVSKQKRKPAGKQGRVQQGRGAGGRQKNQSRNRGKSHRRRSG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaattagacttaccgccctatttattaaaaagtgtgcaaagtatgggc
ttcacagaggccacgtcgattcaggaaaaaattctacccgtcgctcgcaaagggcgcgat
gtcattggacaggcgcaaaccggaacaggaaaaacagcggcgttcgcccttccgattatc
gaaaaagttgatccggaggacccgaacgtacaggcgcttattttgaccccgacccgtgaa
ttagccgtgcaagtgtcggaagaagtcaaccgattaggccgtacgaaaaacgtgaaatct
gtagctgtgtatggtggtgccgacatgggccggcaaatacgggaattaaaatcacgacca
cccatcatcgtcgcgacaccgggccgatatatggatcatacgcgccggaggacgattcgt
ccgcaggccgtttctacggtcgtgctcgatgaagcggatgaaatgttaagcatgggtttt
attgaagatattgaaacgattttagaagcgatccctaacgaacgacaaacgcttttattt
tcagcaacgatgccgagtcgtttaaaaaaagtcgccgatcgctttatgacggaaccgcaa
acggtttctgtaaaagcgaaggcaatgacggtatccaatatcgaacaatttgcgctcaaa
gtacccgaaaaacagaaattgtctgtcctcggtcgcttgcttgattttgaagatcccgat
ctcgccattattttcgggcgcacgaaacgaagggtagacgaactttcagaggcactcgag
catcaaggctacgcagctgccggccttcatggtgatatgaaacaggcagggcggaccaat
gtgttacaccgatttaagcaaggagccataaagtatttggtggcgaccgatgtggccgca
cggggaattgatgtgaccggcgtgacccatgtgtttaatttcgatctaccgcaagatgcg
gaaagctatgttcaccggatcggccggacaggacgagccgggcattccgggaaatcctat
acgttcgcggctcccgttgagatggatcatatggcgatgattgaaaaggcaaccaaagga
agcattaaacacatcgatgttccgagcgaacatgaagcggatattgccagacaagaacgg
gcggctcaccagctcaagaacatcatcgaaaaagaggaacacaccggcttggagccaatg
gcggaaaaactcctagaggagcacgatcaagtgacggtggttgcagccgcgctctccatg
ttgcaaaaggataaaaaagaaccggtcaaaaaactcaccggcgaacggccgatcgttagc
aaacaaaaaaggaaaccggccggcaaacaaggacgtgttcaacaaggccgtggggccggc
ggacgtcaaaaaaatcaaagccgcaataggggaaagtcccaccggcgacgttccggttaa
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