Sylvia atricapilla (blackcap): 136357884
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Entry
136357884 CDS
T10263
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
136357884 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sati03400
]
136357884 (LIG4)
Enzymes [BR:
sati01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136357884 (LIG4)
DNA repair and recombination proteins [BR:
sati03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
136357884 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
136357884
NCBI-ProteinID:
XP_066169609
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Position
2:complement(80295698..80299259)
Genome browser
AA seq
840 aa
AA seq
DB search
MRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPTGSRGDAGDFAM
IAYFVLKPRSPKQGRLTIEQVNEHLDVIANNNAAKNKGQLKKSLLRLITQSTALEQKWLI
RMIIKDLRLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLSDVSIMLFSAFK
PMLAAIADIQQIEKQMNNQTFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGASPL
EGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMVEDSDLQTCFCVF
DVLMVNDQKLGHEVLSKRYEILSNVFTPVKGRIHVVHKRSARTRKEVIDALNEAIDNREE
GIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMMSHFLCAV
AETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPPGNILCGTEKPEM
YIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMTSDMLEDLRSKAQ
GKLASKHLHVDEHDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKVSNVFEDVEFCVM
TGMGKYTKSELESKIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIASNKYDVVRAEWLL
QCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLKEVFSRMKDSKAM
PLDVIAELEERYWCNRCQLGIFRGSTIYVDCYAVVSEPESKIPGTTLSIRALELRFYGAK
VVSHLEEGVSHVIVGEDHSRVEEMKALRRTFGKKFKIVSEPWVTHSVEEGVAKNENQYLV
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgcgacttattctcccacagttggaaagagaaaggatggcatacggaattaaggaaact
atgcttgcgaagctctatattgaactgcttaatttaccaaaagatggaaaagatgctgca
aagcttttaaattacagaacgcctacgggctcacgtggagatgctggagattttgcaatg
attgcatactttgtgctaaaacctaggagcccaaaacaaggcagactgacaatagaacaa
gtcaatgaacatttagatgtgatagctaataataacgctgctaaaaacaagggtcagtta
aagaaaagtcttcttcggttaattacccagagcacagcattggaacaaaaatggcttatc
cgaatgattataaaggatctaaggcttggtgttagtcaacaaactatattttccattttt
catcctgatgctgctgaattgcacaatgttactactgatttggaaaaagtttgcagacaa
ctgcatgatccctctgtctcactcagtgatgtttctatcatgttgttttctgcttttaaa
ccaatgcttgctgctattgcagatattcagcaaattgagaaacaaatgaataaccagaca
ttctacatagaaactaagctggatggtgaacgtatgcagatgcacaaagatggggatgtg
tacaagtatttttcccgaaatgggtttgactatactcagcagtttggtgcttcacccctt
gaaggctcattaacgccatttattcataatgtatttaagagcaatatacaaaattgcatt
cttgatggtgaaatgatggcttacaatcctgagacacagacttttatgcaaaaaggaaac
aaatttgacataaaaagaatggtggaggactctgatctgcagacctgcttctgtgtattt
gatgttttgatggttaacgatcagaagttagggcatgaagtactaagcaaaagatatgaa
atcttaagcaatgtatttactccagtaaagggcaggatacatgttgtccacaagagaagt
gccagaacaaggaaagaagtgatagatgctttaaatgaagcaatagataatagagaggaa
ggaattatggtgaaggatcccatgtccacctacaagcctgacaaacgtggggaaggctgg
ttaaaaatcaagccagaatatgtcaatggactgatggatgaactggatcttttaattgtt
ggtggttactgggggaaggggtctcgtggtggaatgatgtctcattttctatgtgctgtt
gcagagacgccccctccaaatgaaaaaccaaccattttccactccatttgtcgtgttggc
tctggctatactatgaaagagttatatgatctaggcttgaaactggctaaacactggaag
ccctaccataggaaggaccctcctggtaacattttgtgtggaactgagaagcctgaaatg
tacattgaaccttgcaactctgtcatagttcagatcaaggcagctgagattgttgacagt
gatatgtacaaaactgactgtactttaagattcccccgaattgagaagataagggaagac
aaagaatggtatgagtgcatgacttcagacatgttagaagatctcagaagcaaagcacaa
ggaaagctggcgtctaagcaccttcatgtagatgagcatgatgagccgcatgagaagaaa
aggaaaactgtttcaaaggtcaggaaggtaatcggaatagcagagcaatttaaagctcct
gatctttctagtgtaagcaaggtttcaaatgtatttgaagacgttgagttttgtgttatg
acgggaatgggaaaatacacaaagtctgagctggaaagcaaaatagcccagtgtggtggc
agtgtggtacagaacccggggccagagacttactgtgtcattgtaggagctgagaatgtc
agagtgaaaaacatcattgcttccaacaagtacgatgtggtgagggcagagtggcttctt
cagtgttttcaaaccaaaatgctggtgccttggcaaccggcctttatgattcacatgtct
cctgacacaaaagaacattttgctcgtgagtatgattgttatggagacagttacacagca
aacacagatgttgcgcagctcaaggaagtgttctcaaggatgaaagacagtaaggcaatg
cctctggacgtgattgcagagctggaagaacgttactggtgcaacaggtgtcagctcggt
atattcagaggaagcactatatatgtggactgctatgctgttgttagtgagcctgaaagc
aaaatccctggaactacactatcaattagagctttggagctccgtttttatggtgcaaaa
gtagtttctcaccttgaagagggtgtctcccatgttattgtaggagaagatcattcacgg
gtagaagagatgaaagcactcaggagaacatttgggaaaaaatttaaaatcgtatctgag
ccgtgggtaacacactcagtggaggaaggagtcgcaaagaatgaaaatcagtacttagtt
taa
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