Sylvia atricapilla (blackcap): 136362095
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Entry
136362095 CDS
T10263
Symbol
KDM2A
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
136362095 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sati03000
]
136362095 (KDM2A)
04121 Ubiquitin system [BR:
sati04121
]
136362095 (KDM2A)
03036 Chromosome and associated proteins [BR:
sati03036
]
136362095 (KDM2A)
Enzymes [BR:
sati01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
136362095 (KDM2A)
Transcription factors [BR:
sati03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
136362095 (KDM2A)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
136362095 (KDM2A)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
136362095 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
136362095 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Ribosomal_60s
Cupin_8
Motif
Other DBs
NCBI-GeneID:
136362095
NCBI-ProteinID:
XP_066176456
LinkDB
All DBs
Position
6:442329..475814
Genome browser
AA seq
1207 aa
AA seq
DB search
MAAAASVRGQRRRRDLEEEDDDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYE
DDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLIFRSSDG
LGIKMPDPDFSVNDVRLCVGSRRIVDVMDVNTQRDIEMSMAQWARYYETPEEEREKLYNV
ISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS
VKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVS
ECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNK
FRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEEEDD
DAAGKESRRPVTRRSVLTSPIANGADVDFDELGKSCRSSLPALKKTPSIDSSDSSRGSQN
GQAWEPSGGSPRKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKL
LLEEYANSDPKLALTGVPIVQWPKRDKLKLQARLRVRLPTIPITKPHTMKPAPRPTPIRS
TVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLP
HSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLNDELPNCWECPKC
YQGDDAEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPASPRGV
VTRSSPGAGPSEHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKLH
GSYLTVTLQRPTKDVHGTSIVPKLQAITASSANLQHSPRVVVRHAPARMPLRSGADEEAA
AEEEEEEEEEEDENAEEGGAARLNGRGGRAQEGEESCVQREVWMSVFRYLTRRELCECMR
VCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNR
LPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSQDNR
SKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNS
LTELNMAGCNKLTDQALLYLRRISNITLIDLRGCKQITRKACEHFISDLSINSLYCLSDE
KLIQKIS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcttctgtaagaggacaaaggcgcaggagagacctggaggaagaggac
gacgacagcagtcctggcgtgtccttctcgctctcttctgaggagtcggagatggagccc
gaggaagaacggatccgttacagccaaagactgcgtggcacgatgaggcggcgttacgag
gacgacggcatctccgatgatgagattgaagggaagaggacgtttgacctcgaggaaaag
ctgtccaccaacaagttcaactccaccttcgtggtcttcatggaaggcaaagacttcaca
gttgagtacatccagcggggtggcctgagggatccactcatcttcaggagctcggacggc
ctggggataaagatgccggatccagacttcagcgtgaacgatgtgcggctgtgcgtgggg
agccgacggatagtggatgtgatggatgtgaacacgcagcgggacatcgagatgtccatg
gcgcagtgggcgcgctactacgaaacgccggaggaggagcgggagaaactctacaacgtc
atcagcctggagttcagccacaccaaactggagaacctggtgcagagacctgctacggtg
gatttgattgactgggttgataacatgtggcccaggcacctgaaggaaagtcagacagag
tctaccaatgccatcctggaaatgcagtatccaaaggtgcagaaatactgtttgatgagt
gtcaagggctgctacacagatttccacgtggactttggtggcacttctgtgtggtatcac
atccaccgaggaggaaagatcttctggctgatccctcccacaccccagaacctggagctc
tacgaaaactggcttctctcagggaagcagggagacattttccttggggacagagtgtca
gagtgccagcgcatcgagctcaagcagggctacacatttgtcatcccctcaggttggatc
catgctgtgtacactcccatggacacactggtttttgggggcaacttcttacacagtttc
aacatccctatgcagctccggatctacagcattgaggaccgcacacgggtcccaaacaaa
tttcgttatcccttctattatgagatgtgttggtacgtgctggagcgctatgtgtactgc
atcaccagccgctcccacctgaccaaggacttccagaaggaatccctcagcatggatatg
gagctgagctcctcggactcagtgaacatggaagaggaggaggaggaggaggaggatgac
gacgcagcagggaaggaatcccggcgccccgtgaccaggaggtccgttctcaccagcccc
attgccaacggtgccgatgtggactttgatgagctgggcaagagctgccggagcagcctg
ccggctctcaagaagacaccatccatagactcttccgactccagccggggctcccagaac
ggccaggcctgggagccgagtgggggcagcccccgcaagagcaggaaggtgcacctgacc
cagtttgagctggaggggctgcgctgcctcgtggacaagctggagtcgctccctctgcac
aagaagtgtgttcccaccggcatcgaggacgaggacgccctcatcgctgacgtcaagctg
ctgttggaagaatacgcgaacagcgaccccaaactggcacttacaggcgtccccatcgtc
cagtggcccaagagagataagctaaagctccaggcccggctgcgggtgcgcctgcccacc
atccccatcaccaagccgcacaccatgaagccagcaccgcgcccgactcccatcaggtcc
acggtgtctcccatcgtgtcgggcgcccggcggaggcgggtgcggtgccggaaatgcaag
gcctgcatgcagggcgagtgtggcatgtgccactactgcagggacatgaagaagtttggc
gggcctggccgcatgaagcagtcctgtgtcctccggcagtgcttggcgcccaggctgcct
cactcggtcacgtgtgcactttgcggggaggtggatcagaatgaggactcacaggacttt
gagaagaagctcatggagtgctgtatctgcaacgagatcgttcaccctggctgtctgcag
atggatggggaaggactgctcaatgatgagctccccaactgctgggagtgccccaagtgc
taccagggtgacgatgcagagaagggccagaagcgcaaggtggaggagagcgacgacgac
acggcgcaagccaaggtgctgcggcccctgcggagctgcgaggagcccctgacccccccg
cccaactcgcccaccccgatgctgcagctgatccacgaccccgcgtccccccgcggggtg
gtgacacgctcgtccccgggcgccgggcccagcgagcaccacagcgccagccgggacgag
cgcttcaagcgccggcagctgctgcggctgcaggccaccgagagaaccatggtgcgggag
aaggagaacaaccccagcggcaaaaaggagctgtcggaggtggagaaggccaagctgcac
ggctcctacctcaccgtgacgctccagcgccccaccaaagatgtccacgggacttccatc
gtccccaagctccaagccatcacggcctcctcggccaacctgcagcactcgccgcgcgtg
gtcgtgcgccacgcgcccgccaggatgcccctgcggagcggggctgacgaggaggcggcc
gccgaggaagaggaggaggaagaggaggaggaggacgagaacgcggaggaggggggggcg
gcccggctgaacgggcgcgggggccgggcgcaggagggcgaggagagctgcgtccagcgc
gaggtctggatgtccgtgttccgctacctcacccgcagggagctctgcgagtgcatgcgg
gtgtgcaagacctggtacaagtggtgctgtgacaagagattgtggacaaagatagacttg
agcaggtgcaagtccatcaccccccaggcactgagcggcatcatcaaaaggcagccagtc
agcctcgacctcagctggaccaatatctcaaaaaaacagcttacatggctcgtcaacagg
ctgccaggcctgaaagacctcatcctagcgggctgttcctggtctgcagtctgtgctctc
agtacctccagctgcccccttctcaggaccctcgatcttcggtgggcagtaggaatcaag
gaccctcagatccgggacttgctcacgcctccaacagacaaacccagtcaggacaatcgc
agcaaactccgcaacatgatcgacttccggctcgccgggctggacatcaccgacgccacg
ctgcgcctgatcatccgccatatgcccctgctctcccgcctcgacctcagccactgcaac
cacctcacggaccagtcggccaacctcctcaccgccgtgggctcctccacacgcaactcc
ctcaccgagctcaacatggcaggctgcaataagctgacggaccaggccttgctgtacctg
cgccgcatctccaacatcaccctcatcgacctgcggggttgcaaacagatcacccgcaaa
gcctgtgagcacttcatctcggacctgtccatcaacagcctctactgcctgtctgatgag
aagctgatccaaaaaatcagctag
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