Sylvia atricapilla (blackcap): 136362483 Help Entry 136362483         CDS       T10263                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism sati  Sylvia atricapilla (blackcap) Pathway sati04010   MAPK signaling pathway sati04120   Ubiquitin mediated proteolysis sati04140   Autophagy - animal sati04144   Endocytosis sati04620   Toll-like receptor signaling pathway sati04621   NOD-like receptor signaling pathway sati04622   RIG-I-like receptor signaling pathway sati05132   Salmonella infection sati05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:sati00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     136362483 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     136362483 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     136362483 (TRAF6)    04140 Autophagy - animal     136362483 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     136362483 (TRAF6)    04621 NOD-like receptor signaling pathway     136362483 (TRAF6)    04622 RIG-I-like receptor signaling pathway     136362483 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     136362483 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     136362483 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sati04131]     136362483 (TRAF6)    04121 Ubiquitin system [BR:sati04121]     136362483 (TRAF6) Enzymes [BR:sati01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      136362483 (TRAF6) Membrane trafficking [BR:sati04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     136362483 (TRAF6) Ubiquitin system [BR:sati04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     136362483 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX PspA_IM30 RING_XB3-XBAT31 TRAF3_RING Sina_ZnF Med21 zf-RING_11 CENP-F_leu_zip DM U-box Spc29 CEP104_ZnF DUF16 PUMA_CC HAP1_N DUF7310 DUF1664 ADIP HMMR_N AAA_13 Motif Other DBs NCBI-GeneID:  136362483 NCBI-ProteinID:  XP_066177143 LinkDB All DBs Position 6:complement(19532537..19554444) Genome browser AA seq 546 aa AA seqDB search MSLLHSDSSCGGRDGESGCCAAMASACSAAAKEDSSSMGSGAGNPPSSSFTEETQGYDVE FDPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFP DNFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCEFSTVECPQCQGTFPKNHLKEHMT QECPRRQVCCPNCATPMAYEDKELHDQTCPLANVYCEYCNTVLIREQMPNHYDNDCPTAP VPCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNINVTAVNPVPFINGLSFEPT LFSHVSHAAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHVAELKRTIRN LEGRITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQ LPSAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPEL LAFQRPTIHRNPKGFGYVTFMHLQNLKQRTFIKDDTLLVRCEVVTRLDLNSARREGFQAR SADGAM NT seq 1641 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctgcacagtgacagcagctgtggaggccgggacggggagagcggctgctgc gcagccatggccagcgcctgcagcgccgcggccaaggaggacagctccagcatgggcagc ggcgccggcaacccgcccagctcttccttcaccgaggagacgcagggctacgacgtggag ttcgacccgcccctggaaagtaaatatgagtgtcccatctgtctgatggctctccgggaa gccgtgcagacgccgtgcggccaccgtttctgcaaaggctgcattgtcaaatccataaga gatgcaggtcacaaatgtcctgtagacaatgaaattctgcttgaaaatcaactttttcct gacaacttcgccaaacgggaaatcctttcattaatggtcaagtgtcccaacaagggctgc agcatgaagatggagctcaggcacttagaggaccaccagctgcagtgtgaattttccact gtggaatgcccacagtgccaaggaaccttcccaaagaaccatctgaaggagcacatgacc caagagtgtccgaggcgtcaagtgtgttgcccaaattgtgccacgcctatggcctatgaa gataaagagcttcatgaccaaacctgcccacttgccaatgtgtattgtgaatattgcaac acagtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgcccca gtgccatgtttttacagtgcctttggttgtcctgaaaagatgcaaaggaatgaactggca cgacatatgcaggagttcactcaggttcacatgaggatgatggctcagagttttcagaat atcaatgttactgctgtaaatcctgtacccttcatcaatggcctatcctttgagcctacc ctcttctcacacgtgtcacatgctgcctatgactgcaatccagaagttgaaaatttcaag gaaactattcagcagttggaaggtcgtctggtaagacaagatcaccaaatcagggagctc attgctaaaatggagactcagaacactcacgtggcagagctcaaacgtactatccgaaat ttggagggaaggattactgaaatggaggcacagcaatgtaatggtatttatatctggaag attgagaacttcagtggactacagaaagcccaggaagaggagagacctgtagtgatgcac agtcctggtttctatacagggaagcctggctacaagctgtgcttgcgcctgcatatccag ttaccgagtgctcagcgctgtgctaattttatctctctgtttgtccacactatgcaaggg gaatacgacagccacctgccctggcctttccaaggcaccatacgactttctattttggat caatcagaaggcccagaaaggcagaaccatgaagaggtgatggaagccaagccagagctg ctggccttccagagaccgacaattcaccgcaatcccaaaggttttggttatgtgactttc atgcacctgcagaacttgaaacagagaaccttcatcaaggacgacacgctgctggtgcgc tgcgaggttgtgacacgcctggacttgaacagtgcccgcagagaagggttccaggcccgc agtgctgatggagccatgtag

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