Sylvia atricapilla (blackcap): 136369061
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Entry
136369061 CDS
T10263
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
136369061 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sati03000
]
136369061 (KDM2B)
04121 Ubiquitin system [BR:
sati04121
]
136369061 (KDM2B)
03036 Chromosome and associated proteins [BR:
sati03036
]
136369061 (KDM2B)
Enzymes [BR:
sati01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
136369061 (KDM2B)
Transcription factors [BR:
sati03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
136369061 (KDM2B)
Ubiquitin system [BR:
sati04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
136369061 (KDM2B)
Chromosome and associated proteins [BR:
sati03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
136369061 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
136369061 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
136369061
NCBI-ProteinID:
XP_066187786
LinkDB
All DBs
Position
17:11165038..11272375
Genome browser
AA seq
1287 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKSQE
PTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEG
AEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEP
KRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMERHVI
RPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWT
KIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIA
VSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKE
QFCGSCHIRPDFSSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCN
HVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKE
GCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctcaaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaaggcggtacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagcaaaatgtaccacggggatttcgtgcac
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggattttaccgtc
agagatgtgaagctattagtgggaagccgccggatcgtggacgtgatggatgtgaacaca
cagagaggagtggagatgagcatgtctcagtttgtgaggtactacgagaccccagaggcc
cagagggagaagctctacaacgtcatcagcctggagttcagccacaccaagctggagaac
attgtcaagcgccccaacgtggtggacttagtcgactgggtggacaatatgtggccacag
cacttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactctatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggatacacgcggtttatactccggtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccggtatcctttctactatgagatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaagaggctgcagggaggaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagcgtcaaatcaacgaccccaacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagacccgcaggctctcctggaggacatgaagaacatc
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtggggcggcccaaggggaagctgggcgct
gcctctgcggtgaagctcgcggccaaccggagcacggcgggcgcgcggcggcggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggcgagtgccacttctgcaag
gacatgaagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atagctccggtgctgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggtgaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaagactggaaaacaa
aagcgcggaccaggatttaaatacgcgtcaaatctcccgggctcgttgctgaaggagcag
aaaattaacagagacaacaaggaagtgccagatgctgccaaaaggaaaggggactgcgag
gagactcccaggcggaaatcggaggaacattccaaaaaggctccagttgactcaatcctg
aggagaaagtctgacgaggtgcatctgtggaggaaacggaaattcgagaaatcccaggaa
cccacgatgagaaaacggcggcggtcgtggaaggccccggatgaccgaactgccatgatc
aaacccctgcggcgcctcaagcaggagcccgaggatgagctgccagaggcaccccccagg
tccaaggatagtgaccagtctcggtccagctcgcccacagcagggcccagcacggagggc
gccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataaa
gaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaaccgagaacagc
cttgccaatgagaaccaccaacccatcaaatctgagccggagagcgagaacgaggagccc
aagcgcgcgttgaacaacagcgagagactccacaggttcagcaaagggttgaacgggact
ccccgggagctgaggcaccaccagctcatgcccagcctgcgcagcaccccccggggcatc
gcccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcggcacgtcatc
cggccacctcccatcagcccccctccggactcgctccccctggatgacggggcagcccac
gtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagacttgtgc
atctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatggacc
aaaatagatttaaaccattgtaaatccatcactccacttatgcttagcggcattattagg
agacagcctgtaacccttgaccttagctggacaaatatatctaaaaagcagctgagttgg
cttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctcatggattgca
gtgtcggcactttgtagctccagttgtcccttgctgcgaactctggacgtgcagtgggcg
gaagggctgaaagacgcacaaatgagagacctcctgtccccgcccacggacaaccggcca
ggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcagggaaggag
cagttctgtgggtcatgccacattcgcccggatttcagctcaggtcagatcgacaaccgg
agcaagctacggaacatcgtggagctgcgcctggccgggctggacatcacggatgcttcg
ctgcggctcatcatcaggcacatgcccctgctctccaaactcaatctcagttactgtaac
cacgtgacagatcagtctattaacctgctgaccgccgtcggaaccaccacgcgggattcg
ttaacggaaattaatttatcagactgcaataaggtcactgaccagtgcctgtcttacttc
aaacgttgtgggaacatctgccagatcgacctgaggtactgcaagcaagtgacgaaggag
ggctgtgagcagttcatagcggagatgtccgtaagtgtccagttcgggcaggtggaagaa
aaacttctgcaaaaactgagttag
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