Sylvia atricapilla (blackcap): 136372300
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Entry
136372300 CDS
T10263
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sati00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136372300 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sati03041
]
136372300 (EFTUD2)
Spliceosome [BR:
sati03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136372300 (EFTUD2)
Complex C
U5 SnRNP specific factors
136372300 (EFTUD2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
136372300
NCBI-ProteinID:
XP_066192949
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All DBs
Position
27:complement(3464342..3485750)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGEHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggcccgagttggactcggac
gatgacgacgacgagctgggccgagaatccaaagacctggacgagctggaggatgatgac
gatgacgatgacatgggggagcacgacgaggagcaccccgggatggaggtggtgctgcac
gaggacaagaagtactaccccacagcagaggaggtgtatgggcctgaggtggagaccata
gtgcaggaggaggacacacagccactcactgagcccattattaaacctgtgaagaccaag
aagttctccctgatggagcagacactgccagtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccat
ggcaagacgtgttttgttgactgcctgatagagcagacgcacccagaaattcggaagcgc
tacgatcaggatctctgctacactgatatattgttcacagagcaggagaggggggtgggg
atcaagagcaccccagtgacgattgttctcccagacaccaaaggaaagtctttcctcttc
aacatcattgacactccaggtcatgtgaatttttctgacgaggtgacagccggccttcgc
atctcggatggcgtcgtgctcttcatcgacgcggccgagggggtgatgctgaacacggag
aggctgatcaagcacgcggtgcaggagaggctggcagtgactgtgtgcatcaacaagatc
gacagactcatcctggagctgaaactgccccccacagacgcttattacaaactcagacac
atcgtagacgaagttaatggtctgatcagcatgtattccaccgacgagaacctcgtgctg
tctccccttctggggaacgtgtgtttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatctatgcagacacatatggagacatcaattaccaagagtttgcg
aagcggctttggggcgacatctatttcaatccaaagacccgcaagttcaccaaaaaggcc
ccgacaagcagttcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacgacgctgcccaggactctggatgaacttggc
attcacctgaccaaagaggaattaaaactgaacatccggcccctgctgcggcttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacatcccctcc
ccgaaagtgggggccaagaccaaaattgagcacacgtacaccggcggcgtcgactccgac
ctgggggaggccatgagcgagtgcgaccctgatggtcccttgatgtgtcacacaaccaaa
atgtacagcactgatgacggtgtccagttccacgcctttggcagagtgctcagtggcacc
atccacgctgggcagcctgtcaaggtccttggggagaactacaccctggaagatgaggag
gattcccagatctgcactgttggacgcctctggatctcagttgcaaggtatcacattgag
gtgaacagggttcctgctggcaactgggtgctgatcgagggcgtggaccagcccatagtg
aagacggcgactgtgacggagcctcggggcaatgaggaggctcagatcttccgtcccttg
aagttcaacaccacatctgttatcaaaatagctgtggagccagtcaacccctcagagctc
cccaaaatgctggatggtctccgcaaagtcaacaagagctacccctcacttacaactaag
gtggaagagtctggggagcatgtgatcctgggaacaggagagctgtacctggactgtgtg
atgcacgatctgcggaagatgtattccgagattgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcatccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcccctggagaagggactggcagaggacatt
gagaatgaagtggtgcagataacatggaacagaaagaagctgggtgaatttttccagacc
aaatatgactgggatttgctggctgcccgttccatctgggcctttgggccagatgccact
ggcccaaacatcctggtagatgacacactgccctcagaggtggacaagtctctgctgggc
tcagtgaaggacagcatcgtgcagggcttccagtgggggaccagggaagggcctctctgt
gatgaattgatccgcaatgtgaagttcaagatcctggacgcggtgattgctcaggagccc
ttgcaccggggtggagggcagatcatccccacggcccgcagggtcgtctactccgccttc
ctcatggccacccctcgcctgatggagccctactacttcgtggaggttcaggctcctgcc
gactgcgtgtctgctgtgtacacggtgctggcccggcgcagaggccacgtgacgcaggat
gctccgatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttgggtttgagacagacttgaggacccacacacagggacaagccttctctctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccggccg
ctggagccgcagccagccccacacctggccagggagttcatgatcaagaccaggcgtagg
aagggcctgagtgaggacgtgagcatcagcaagttctttgacgaccccatgttgctggaa
ctggccaagcaagatgtcgttctcaactatcccatgtga
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