Staphylococcus condimenti: A4G25_04145
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Entry
A4G25_04145 CDS
T04648
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scv
Staphylococcus condimenti
Pathway
scv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4G25_04145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scv03019
]
A4G25_04145
Messenger RNA biogenesis [BR:
scv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4G25_04145
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AMY05167
UniProt:
A0A143P9L1
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Position
817702..819654
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AA seq
650 aa
AA seq
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MKQLKNNEVGVYALGGLGEVGKNTYAVEYKDEIVLIDAGIKFPDDNLLGIDYVIPDYSYL
VQNKDKIVGLFITHGHEDHIGGVPFLLKELNIPIYGGPLALGLIRNKLEEHHLLRTAELH
EINEDTEIDSKYFNISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGTPANIAK
MAKIGEEGVLCLLSDSTNALVPNFTLSEREVGQNVDKIFRKCTGRIIFATFASNIYRVQQ
AVEAAVKYNRKIVVFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYRAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIRPKFFMPIHGEYRMLKAHSQTGVQCGVEEDNVFIFDNGD
VLALTRDSARKAGRIPSGDVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNTL
LSGPDIISRGFVYMRESGHLIYDAQRKIKTDVIGKLNQNKDIQWHQIKSSIIETLQPYLY
EKTARKPMILPVIMKVNEDGEQITKPSKPKSNSKPKKNNKKGNGSNPKNESKNNQGGRPP
KRNNNGRNDQSKNNKPANKKESSSKSGSNSTQKPHPKPKNKPDSKKENKE
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaactaaaaaataatgaagtcggcgtatacgcacttggcggacttggagaagtc
ggcaagaatacgtatgctgtcgaatataaagatgaaattgtccttattgatgcagggata
aaattccctgatgacaatttattagggattgactatgtcatccctgattattcttatctt
gtacaaaacaaagataagattgtcgggcttttcatcacacatggacatgaagaccatatc
ggcggtgtgcccttcttattaaaagaacttaatataccgatatatggcggtcctttagca
cttggacttatccgcaacaaattagaagaacatcatttgctaagaactgctgagttgcat
gaaatcaatgaagatacagaaattgattctaaatatttcaatatctcattttatctgact
actcacagtattccggaagcttacggtgtgattgtggatactccagaaggtaaaattgtg
catacaggtgatttcaaatttgatttcactcctgtcggcacacctgcgaatattgcaaaa
atggccaaaatcggtgaagaaggcgttttatgtcttctttctgattctaccaatgcttta
gtcccgaatttcactttaagtgaacgcgaagttggacaaaatgttgacaaaattttccgt
aaatgtacaggcagaattatttttgctacattcgcttctaacatttaccgcgtacaacaa
gctgttgaagcggctgttaaatataatcggaaaattgttgtttttggtcgttctatggaa
aataacattaaaatcgggatggaacttggttacattaaagcaccacctgaaacatttatt
gaacctaataaaatcaattcagtaccaaaacatgaattgttaattttatgtactggttct
caaggtgagccaatggctgcactttctagaattgcaaatggtacacacaaacaaattaaa
attattcctgaggatactgttgtattcagttcttcacctatcccaggcaacacaaaaagt
attaaccgtacaatcaatgcattgtaccgagctggtgcagatgttattcatagtaagatt
tctaatatccacacatcaggtcacggttctcaaggtgatcagcaactgatgcttcgtttg
attcgtccgaagttctttatgccgattcatggtgagtatcgtatgttgaaagcacattct
caaactggtgtgcaatgcggtgttgaagaagataatgtgtttatctttgataatggtgat
gtgttggcattaacaagagattctgcacgtaaagcaggacgtattccgtctggagatgtg
ctggtagatggaagcggtattggagacatcggtaatgttgttatccgtgaccgtaaattg
ttatctgaagaaggtttagtgattgttgtagtaagtatcgacttcaatacaaacactcta
ctttcaggtcctgatattatttctcgtggttttgtatacatgcgtgaatcaggtcattta
atttatgatgcacaacgtaaaattaaaacagatgtcatcggtaaattaaaccaaaacaaa
gatatacaatggcatcaaatcaagtcatctattatagaaacattgcaaccttatctttat
gaaaaaacagcacgtaaacccatgattttaccggtaattatgaaagtaaatgaagatggc
gagcaaattactaaaccatctaaaccgaaatcaaattctaaacctaagaaaaacaacaaa
aaaggtaatggttcgaacccaaaaaatgaatcaaaaaataatcaaggcggtcgtccacct
aaacgcaataataacggacgtaacgatcaatctaaaaacaataaacccgctaataaaaaa
gaatcaagttctaagtcaggttcaaacagtacacaaaaaccacatccaaaacctaaaaat
aaacctgattctaaaaaagaaaacaaagaatag
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