Staphylococcus condimenti: A4G25_06975
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Entry
A4G25_06975 CDS
T04648
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scv
Staphylococcus condimenti
Pathway
scv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4G25_06975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scv03400
]
A4G25_06975
Enzymes [BR:
scv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4G25_06975
DNA repair and recombination proteins [BR:
scv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4G25_06975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
Glyco_hydro_115
DUF3105
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AMY05682
UniProt:
A0A143PAW9
LinkDB
All DBs
Position
complement(1376588..1380106)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKSIITDYINKDKRYEELNDAFGQENVLVTGLSGAAKATMMAEKYLSSDRPLVVVTNNLY
QADKLEADIQQYINDDEIYKYPLQDIMTEEFSTQSPQLMSERVRTLTGLAEGQRGFFIIP
LNGLKKLQTPVDIWKSHQVKLSVGDDIDVDDFLNKLVDMGYRRETAVSHIGEFSLRGGII
DIYPLIGAPVRIELFDTEVDSIRQFDIETQRSEENQDTVEITSASDYIITDDVLKRIKTQ
LKEAYENTRPKIEKSVRNDVKDTYESFLQFDSNFVDHQVIRRLVAFMYEQPATLVDYISN
NAIIAVDEYNRVKDTEETLTTEVNDFMTQLIESGKGFIGQQFMNDKAFETLISTRNITYF
TLFTASMPVKLNNIIKFSSKPVQQFYGQYDIMRSEFQRYVNNGYTVVVLVETETKKERVK
SMMNEMHIPVVEGEAGEHMEGGHAVIVEGSLSEGFELPYMQLAVVTERELFKSKQKKAKK
RTPTMSNAERIKSYQDLKIGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKIQYKGTDQLF
VPVDQMDQVQKYVASEDKTPRLNKLGGTEWKKTKAKVQQSVEDIADELIELYREREMAQG
YQYGADSEQQHEFEMDFPYDLTADQSKSIVEIKDDMEKERPMDRLLCGDVGYGKTEVALR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVNIQLMSRFRTPKEVKETKKGLE
DGTVDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGGQAFYLYNKVQ
SIYEKKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVNGEYDILVTTTIIETGVDVPNA
NTLIIEDADRFGLSQLYQLRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETTTPEIEI
DLNMDAYLPTEYIPNEQSKIEIYKKLRQIENEEQLMDIKDELIDRFNEYPIQVERLLDIV
EMRIHALNVGVLSIKDTGKAVEVQLSEKGTEDINGEALFKQTLPLGRDMKVGVEDGAMKV
TLAKNKRAGAWFDRLKFLMKSLEESMVIPDEA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaataattacagattatataaataaagataaaagatatgaagagttaaatgat
gcattcggccaagagaatgttttagtaaccggtctttcaggcgctgccaaagcaacaatg
atggcagagaaatatctttcttctgatcgtccgcttgtcgtagttacaaataatctctat
caagcagataaattagaggcagatattcaacaatatattaatgatgatgagatttataag
tatccgctccaagacattatgactgaggagttttctacacaaagtcctcaactgatgagt
gaacgtgtacgtacccttactggcttagccgaaggacagcgagggttctttatcatacct
ttaaatggtctgaaaaaattacaaacacctgtcgatatttggaaatcacatcaagtgaag
ttgtcagtaggtgatgatattgacgttgatgattttcttaataaattagtcgacatgggt
tatcgtcgagaaactgctgtgtctcatatcggagaattctcattacgcggaggcattatt
gatatatatccgcttattggcgcgcctgtacgtattgaattatttgatacagaagtagat
tcaatccgccaattcgatatagaaacacaacgttctgaagaaaaccaagatacagtagaa
atcacatcagccagtgattatattattacagatgatgtgctcaagcgtattaaaacacaa
ttaaaagaagcatatgaaaatacgcgccctaaaatagagaaatctgtacgcaatgatgtt
aaagatacgtatgaaagctttttacaattcgacagcaacttcgttgatcaccaagttatc
cgacgtttagttgcttttatgtatgaacagcccgcaacactagtagactatatcagcaac
aatgcgattatcgctgtagatgaatacaacagagtaaaagatacagaagaaactttaaca
acagaagtcaatgactttatgacgcaattgattgaaagtggaaaaggttttatcggccag
caatttatgaatgataaagcttttgaaacgcttataagtacaagaaacattacgtacttt
acactttttacagccagtatgcctgttaagttaaataatattattaaattctccagtaaa
cctgtgcaacagttttatggtcaatatgatattatgcgttctgaattccagcgttatgtc
aacaacggctatacagttgtcgtactggttgaaacagaaacaaaaaaagaacgcgtcaaa
tctatgatgaacgaaatgcatattccggttgtagaaggtgaagcaggagaacatatggaa
ggcggtcatgcggttattgtcgaaggcagtctttcagaaggttttgaactgccttatatg
caattagctgttgtgacagaacgtgaattattcaagtctaaacagaaaaaagctaaaaaa
cgcacaccgacaatgagcaatgctgaacgtatcaaatcttatcaagatttaaaaatcggg
gattatgttgttcatgtccaccatggtgtcggtcgttatttaggtgttgaaacacttgaa
gtcggcgatgtgcatcgcgactatattaaaatccaatataaagggacagaccagttgttt
gtacctgtggatcaaatggatcaagtacagaagtatgtcgcttctgaagataaaacaccg
cgacttaataaactcggcggtactgaatggaagaaaacgaaagcgaaagttcaacaaagc
gttgaagatatcgcagatgaattgattgaattatatcgtgaacgtgaaatggcgcaaggt
tatcaatatggtgcagattctgaacagcaacatgaatttgaaatggactttccatatgat
ttaacagcagaccaaagtaaatctattgtggaaatcaaagacgatatggaaaaagaacgt
ccgatggatcgtctgctttgcggtgatgtaggttacggtaaaacggaagttgcgcttcgt
gctgcttttaaagctgtaatggaaggcaaacaagtagctttcttagttccgacaactatc
ttagcgcagcagcactatgaaacactgattgaacgtatgcaagatttcccggtaaatatt
caattaatgagccgtttccgtacaccgaaagaagtcaaagagactaaaaaaggattagaa
gacggtacagtcgatattgtcgtagggacacacaaactcttagccaaagatgtgaagtat
aaagatttaggattgcttgtggtcgatgaagaacaacgttttggtgtacgacacaaagaa
cgtattaaatcactgaaaacgaatgtcgatgtattaacattaacagcaacacctattccg
cgtacgttgcatatgagtatgcttggggtacgtgacttgtctgttattgaaacaccgccg
gaaaatcgcttcccagtccaaacttacgtcctagaacaaaattcaaacttcatcaaagaa
gcacttgaacgcgaattatcacgcggcggccaagcattctatttatacaacaaagtacaa
tccatctatgagaagaaagaacagctgcagatgctgatgcctgaagctaatatcggcgtg
gcgcatggccgtatgacagaacgtgaactggaagatacgatgattgggttcgtcaacgga
gaatacgatattttagtcacaacaaccattattgaaactggtgtggatgtgccgaatgcg
aataccttgattatcgaagatgcagaccgcttcggtttgagtcaattgtatcaattgcgc
ggacgtgtcggtcgatcatctcgtgtcggttatgcttacttcttgcacccgacaaacaaa
gtattatcagaaacagcagaagagcgtctgcaagccatcaaagagtttacagaactcggc
agcggcttcaaaattgcgatgcgtgatttgaatattcgcggtgccggcaacttgctcggc
aaacagcagcatggctttatcgattcagtcggtttcgacttgtactcacaaatgttagaa
gaagcggttaatgaaaaacgcggcatcaaagaagaaacaaccacaccagaaatcgaaatt
gacttgaacatggatgcatatctgccgacagaatatatcccgaatgaacaatctaaaatt
gaaatctataaaaaactccgtcaaattgaaaatgaagagcagttaatggatattaaagat
gaattgattgatcgtttcaatgaatatccaattcaagttgaacgattgttagatattgtt
gaaatgcgtattcatgcattgaatgtcggtgtactgtctattaaagatactggtaaagca
gtcgaagtccaactgtcagaaaaagggacagaagatattaacggtgaagcattatttaaa
caaaccttgcctttaggacgcgacatgaaagtcggcgttgaagatggtgcgatgaaagtt
acattggctaaaaataaacgtgcaggggcatggttcgaccgtttgaaattcctaatgaaa
tcattggaagaaagtatggttataccggatgaagcgtaa
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integrated database retrieval system
