Staphylococcus condimenti: A4G25_12265
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Entry
A4G25_12265 CDS
T04648
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scv
Staphylococcus condimenti
Pathway
scv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4G25_12265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scv03019
]
A4G25_12265
03009 Ribosome biogenesis [BR:
scv03009
]
A4G25_12265
Enzymes [BR:
scv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4G25_12265
Messenger RNA biogenesis [BR:
scv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4G25_12265
Ribosome biogenesis [BR:
scv03009
]
Prokaryotic type
rRNA helicases
A4G25_12265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Flavi_DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMY06664
UniProt:
A0A143PFW4
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All DBs
Position
2553301..2554824
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AA seq
507 aa
AA seq
DB search
MQKFKDLGVSDKTAETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPL
IEKVVDKEGVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQTML
FSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQIEQTND
RRMRALRPPHRKEVLRARENDIKEKVEKWMSQEHSERLQDISSQLLNEYNDVELVSALLQ
ELVEANDEVEVQLTFEKPLARKGGRHNGKGPRRSGKPNKRSNNKFDNKNRRGKGNKGGKN
NSGKKFKNDKKDHKKPIKGRTFADMQK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttaaagatttaggtgtttcagataaaacagccgaaacacttggtaatatg
ggttttgaagaaccgactccaatccaaacagatagtatcccttacgctttacacggatta
gacatcttaggacaagcacaaacaggtactggtaaaacaggtgcattcggtatcccatta
atagaaaaagtagtagataaagaaggcgtgcaagcattgattttagctccgacacgtgag
ttggcaatgcaagttgcagaacaattaagagcttttagtcgcggacaacgcgttcaagtt
gcgacagtattcggtggtatgccgattggacgtcaaatcaaagccttgaaaaaaggaccg
caaattgtggtaggtacaccaggtcgtgttattgaccatttaaatcgtcgtactttgaaa
acagacgatattaaaacattgattattgatgaagcagatgaaatgatgaacatgggattc
attgatgatatgagatttattatggatcatcttccatctgaagatagacaaacaatgttg
ttctcagcaacaatgccaaaagcaattcaaacgcttgttcaacaatttatgaaatcacca
aaaattgttaaaacaatgaataacgaaatgtcagatcctcaaattgatgaatattataca
attgtaaaagaactagaaaaatttgaaacgtttactaatttcttagatgtacatcaacct
gaattggcgattgtattcggtcgtacaaaacgtcgtgtagatgagttgacaagtgcatta
atttctaaaggttataaagcagaaggcttgcatggcgacattactcaagcaaaacgttta
gaggtattgaaaaaattcaaaaatgatcagattgacattttagttgcaacagatgttgct
gcacgtggattagatatctcaggtgtcagccatgtttataacttcgatattcctcaagat
actgaaagttatacacaccgtattggtcgtacaggtcgtgctggtaaaaaaggtatcgct
gttacatttgtgaacccgattgaaatggattatatccgtcaaatcgaacaaacaaatgac
cgccgcatgagagctttacgtcctccgcaccgtaaagaagtgttgcgtgcgcgtgaaaat
gatattaaagaaaaagttgaaaaatggatgtctcaagagcattcagaacgtttgcaagat
atctcttctcaattgttaaatgaatataatgacgtagaacttgtatcagctttacttcaa
gaattagttgaagcaaatgatgaagtagaagtacaattgacatttgaaaaaccgcttgct
cgcaaaggtggtcgccataacggaaaaggcccacgcagaagcggtaaaccaaataaacgt
tcaaacaataaatttgataataaaaaccgtcgcggcaaaggtaacaaaggcggtaaaaat
aatagcggcaaaaaatttaaaaatgacaaaaaagatcataaaaaaccaatcaaaggacgt
acatttgctgacatgcaaaaatag
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