KEGG   PATHWAY: senb03430
Entry
senb03430                   Pathway                                
Name
Mismatch repair - Salmonella enterica subsp. enterica serovar Bovismorbificans
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
senb03430  Mismatch repair
senb03430

Other DBs
GO: 0006298
Organism
Salmonella enterica subsp. enterica serovar Bovismorbificans [GN:senb]
Gene
BN855_11610  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
BN855_19590  [KO:K02345] [EC:2.7.7.7]
BN855_19610  [KO:K10857] [EC:3.1.11.-]
BN855_21530  [KO:K01141] [EC:3.1.11.1]
BN855_2470  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
BN855_25110  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
BN855_25970  xseA; exonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
BN855_27200  [KO:K02345] [EC:2.7.7.7]
BN855_2740  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
BN855_29520  [KO:K03555]
BN855_30670  mutH; methyl-directed mismatch repair protein [KO:K03573]
BN855_31060  [KO:K07462] [EC:3.1.-.-]
BN855_35620  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
BN855_38340  ligA2; NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
BN855_39260  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
BN855_40220  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
BN855_4210  xseB; exodeoxyribonuclease small subunit [KO:K03602] [EC:3.1.11.6]
BN855_43260  ssb2; single-stranded DNA-binding protein [KO:K03111]
BN855_44310  mutL; DNA mismatch repair protein [KO:K03572]
BN855_45540  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
BN855_46270  rimI; modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine [KO:K02344] [EC:2.7.7.7]
BN855_4830  [KO:K02343] [EC:2.7.7.7]
BN855_6400  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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