Stenotrophomonas geniculata: RKE57_18070
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Entry
RKE57_18070 CDS
T09411
Symbol
smeF
Name
(GenBank) multidrug efflux RND transporter outer membrane subunit SmeF
KO
K18139
outer membrane protein, multidrug efflux system
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen01501
beta-Lactam resistance
sgen02024
Quorum sensing
Module
sgen_M00642
Multidrug resistance, efflux pump MexJK-OprM
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RKE57_18070 (smeF)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RKE57_18070 (smeF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sgen02000
]
RKE57_18070 (smeF)
01504 Antimicrobial resistance genes [BR:
sgen01504
]
RKE57_18070 (smeF)
Transporters [BR:
sgen02000
]
Other transporters
Pores ion channels [TC:
1
]
RKE57_18070 (smeF)
Antimicrobial resistance genes [BR:
sgen01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RKE57_18070 (smeF)
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
RKE57_18070 (smeF)
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
RKE57_18070 (smeF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
DUF5421
Motif
Other DBs
NCBI-ProteinID:
WNF09951
LinkDB
All DBs
Position
complement(3939372..3940757)
Genome browser
AA seq
461 aa
AA seq
DB search
MKFSSLAVSLAGVLALAGCSTLVPKNTAVAPAIPAQWPAEAAQGQVADVAAVGWRDFFTD
PRLQQVIDQSLQNNRDLRVAVLNVERARGQYRVQRADRVPGVAVTGQMERRGTDAGVTEQ
FTAGVGVAEFELDLFGRVRNLSEAALQQYFAVAANRRNAQLSLVAETATAWLTYGADAQQ
LKIAEATLKTYEDSLRLAEARHERGGSSALELTQTRTLVETARTDAARLRGQLAQDRNAL
ALLAGGQLDPALLPDSIEPQLLALAPPPAGLPSDVLLQRPDIMAAEHQLLAANANIGAAR
AAFFPSISLTGSIGSGSNELSNLFDSGTRVWSFLPKITLPIFQGGKLRANLAIANADRDI
ALAQYEKSIQVGFRETADALALNVSLDEQVSSQQRLVDAAEQANRLSQARYDAGLDSFVT
LLDARRTAYNAQQTQLQAQLAQQANRITLYKVLGGGWHERS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctcttctcttgctgtatccctggccggcgtgctcgcgctggccggctgctcc
actctggtgccgaagaacaccgctgtcgctccggcgattccagcgcagtggccggccgaa
gccgcgcagggccaggtggccgatgtcgccgccgtcggctggcgcgacttcttcaccgat
ccacgcctgcagcaggtgatcgaccagtcgctgcagaacaaccgcgacctgcgcgtggcc
gtgctcaatgtagagcgcgcgcgcggccagtaccgcgtacaacgcgccgaccgcgtgccc
ggcgtggctgtcaccggccagatggagcgccgaggcaccgacgccggcgtcaccgagcag
ttcaccgccggtgtcggcgtggccgagttcgagctggatctgttcggccgcgtgcgcaat
ctcagtgaagcggcgttgcagcagtacttcgccgtggccgccaaccgccgcaacgcgcag
ctgagcctggtggccgagaccgcgactgcgtggctgacctatggtgccgatgcacagcag
ctgaagatcgccgaggccacgctgaagacctacgaggattcgctgcgcctggccgaggcc
cgccacgaacgtggtggcagttcggcgctggagctgacccagacccgtaccctggtcgag
accgcacgtacggatgctgcacgcctgcgtggccagctggcccaggaccgcaatgcgctg
gcgctgctggccggtggccaactggatccggcactgctgccggacagcatcgaaccgcag
ctgcttgcactggccccgccgccggccggcctgcccagcgacgtgctgctgcagcgcccg
gacatcatggccgccgaacaccagctgctggccgcaaacgccaacatcggtgcggcacgc
gcagcgttcttcccgagcatctcgctgaccggcagcatcggcagtggttcgaacgaactg
tccaacctgttcgacagtggcacccgtgtatggagtttcctgccgaagatcaccctgccg
atcttccagggcggcaagctgcgcgccaatctggccatcgccaacgcagatcgtgatatc
gctctggcgcagtacgagaagtcgatccaggtgggcttccgcgaaaccgccgatgcgctg
gcattgaatgtcagcctggacgagcaggtgagttcacagcagcgcctggtggacgcggcc
gaacaggccaaccgcctgtcgcaggcccgctacgacgcggggctggacagcttcgtcacc
ctgcttgatgcgcggcgtaccgcctacaacgcgcagcagacccagctgcaggcccagctg
gcgcaacaggccaaccgcatcaccctgtacaaggtgctgggtggcggctggcacgagcgc
agctga
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