Scomber japonicus (chub mackerel): 128354060
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Entry
128354060 CDS
T09718
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128354060 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128354060 (lig4)
Enzymes [BR:
sjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128354060 (lig4)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128354060 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
128354060
NCBI-ProteinID:
XP_053170278
LinkDB
All DBs
Position
24:complement(13637752..13641998)
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AA seq
910 aa
AA seq
DB search
MEGTSKSDPGGQLSVAAQVPFLHLCVTLEKIQKAKLRPEKSKTLGDFIESWRKFHSALHK
DNPKTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNAGKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKEIVLQVFHPDAAELYNVNTDLNKVCQQLHNPTVSL
SDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLAGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTETFMQKGSKFDIKKLM
DDSELQTCFCVFDVLLVNGQKLGKDTLKKRYEALQTVFTPVKGRMHLVPKTDGRTMQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCGIAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
DSILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNSTLRFPRIERIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLRIDNDEPQKKKRKMVAKPKKVVGLIDHFKSQDLSGIKKET
DMFEDVEFCILNGTEDHPKAELEKGVAKCGGIVVQNPGRETYCVIAGMENMRVKNLISSN
QHDVVWAAWLLECLDQKQVVPWQPCHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLQE
VFNRIGGADSPAAVNVGQVEERYGWDDLLTSMFRPFTAYMDSYADIGDPKSTIPANCLDI
RALEFRYHGGTVVKKLEEGVSHVVIAEETRLLDLRTLRRTFRKKFKIVRDSWVTDSISEG
YLMNDNDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttctaaaagtgatcctggtggtcagctgtctgttgctgctcaggttcct
ttccttcacctgtgtgtcactttagagaaaatccagaaggcgaaactccgtccagagaaa
tccaagacccttggtgatttcattgaatcgtggaggaagtttcattctgccctccacaaa
gataaccccaaaacaacagactctttctatccagctatgcgcctcatagttccctctttt
gaacgagagcggatggcatatggcatcaaagagagcatgttggctaaactctacattgat
gtgttaggtctcccaaagaatggcccagaagccaataaactcttgaactatcgagctcca
accacatcccaaggagaagctggcgactttgccggcatggcatactttgtgctaaagaaa
cggtgcaccagccagggaaacctcagcatcaaagaagtcaatgactttctggattcagtg
gccatcaacaacgctggcaagcagaaggaccttgtgaaaaagagtcttctgcatctaatc
acacagagctcggctctcgagcaaaagtggctcatccgaatgattctgaaggacatgaag
cttgggatcagcaaagaaattgttctccaagttttccatccggatgctgctgagctctac
aatgtgaacacagacttaaacaaggtctgccaacagctccacaaccccacggtgtcattg
agtgacgtctccattggactcttctctgctttcaaacccatgttggcagctgttgctaac
atccgcaatgtagagaaacagatgggaaacagccctttttacattcaaaccaagctggat
ggggagcgaatacaactgcataaggatggagatgtgtacaaatactttagccgaaatgct
tttgaatacacacagcaatttggaggatccccactggcgggttctctcacaccttacatc
cacaacgtttttaaaagccatgtcgtgaactgcatcctcgacggagagatgatggcgtac
aacccaaccactgagacattcatgcagaaagggagcaaatttgacatcaagaagctaatg
gatgactctgagttacaaacatgcttctgcgtgtttgacgtgctgttagtcaatggccaa
aagcttggaaaggatacactgaagaagcgctacgaggccctgcagacagttttcacccca
gtcaagggaaggatgcacctagtgccaaagacggacggcagaaccatgcaggaggtggtg
aatgccctcaatgacgctatagacaacagagaggagggaatcatggtgaaggatccttta
tccatctacaaacctgacaagcgtggggagggatggctgaaaataaagccagaatatatg
gatggcttgatggatgagcttgacctgctgattgttggtggctactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtggcattgccgaagctccaaagcctggtgag
aaaccttcggttttccactcattctgccgcattggctctggctacaccatgaaggagttg
tatgaccttggcttaaaactagccaagcactggaaggtctaccgcaaaaatgacccacca
gattctatcctgtgcggaacagaaaagccagaagtctacatcgaaccctgcaactcggtc
atcattcaggtcaaagcggctgagatagtcggaagtgacatgtataaaaccaacagcacc
ctccgtttccccagaattgagaggattcgcgacgataaggagtggcaccagtgcatgact
ctggcagagctggatcagtttcgcagcaaggcgtcgggaaaactagcctcacggcatctt
cgcattgacaacgacgaaccacaaaagaagaagcgcaagatggtagccaaacccaagaag
gtggttgggctcatcgaccactttaagtcccaagacctctccgggattaagaaagagaca
gatatgtttgaggatgtggagttttgcatcctgaatgggactgaagatcacccaaaagca
gagctggaaaagggtgtggccaagtgtggaggtatcgtggttcaaaatcctggacgggaa
acctactgcgtgatcgccggcatggagaacatgcgtgtgaaaaacctgatttcatccaac
cagcatgacgtggtgtgggccgcctggctgctggagtgcctggaccagaagcaagtggtc
ccatggcaaccctgccacatgatccacatgtcgccatccaccagggaacacttcgccaaa
gagtacgacagctacggcgatagctactttgtggacacagacgagcagcaactacaggaa
gtgttcaaccgcattggaggtgcggactcaccggcggccgtgaacgttggtcaggtggag
gagcgatatggttgggatgatcttctcaccagcatgttcagacccttcacggcttacatg
gacagttacgccgacataggagaccctaaaagtaccatacccgccaactgtttggacatc
agggcgctggagtttcgttaccatggaggcacggtggtgaagaagttggaggaaggagtg
tcccatgttgttatcgcagaggaaacaagacttctagatttaaggactctgaggcgcacc
tttaggaagaagtttaagattgtaagagactcatgggtgaccgattcaatcagtgaagga
tatctgatgaatgacaacgactacttagtttga
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