Scomber japonicus (chub mackerel): 128356169
Help
Entry
128356169 CDS
T09718
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
128356169 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128356169 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
128356169 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_PARP14_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
128356169
NCBI-ProteinID:
XP_053172605
LinkDB
All DBs
Position
3:19647766..19666142
Genome browser
AA seq
3238 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLEDSSPSSSRDVTGFSRGTVGPVFGPPVSL
HTREGRYERRLDGSSESRERAYDHSPYGHHERSGTFDRQRHYNADYYRDRSMFAAAGPGS
SAIGGSFEASDPHFDSRIRDPFSLTNATRRDLYRDDRGRRVDRTYHHRRSRSSHSSQSRH
PSPQRTGQTPKTPHSPKRAPLSPGRGPRSQSRSRSSSSDSVSSTSSTGSGSDSNSSSSDG
SRARSVQSSATHAPPQTSMVLDSDEPRRSFGIKVQNLPVRSTDTSLKDGLFHEFKKHGKV
TSVQIHGASEDRYGLVFFRQQEDQEKALSVSKGKLFFGMLIEVTAWNGPETESENEFRPL
DGRIDEFHPKATRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGVPQYAFVQYSD
IASVCKAIKKMDGEYLGSNRLKLGFGKSMPTTCVWLDGLATNITEQYLTRHFCRYGHVVK
VVFDRMKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQMAFYRSMQASGQD
IRDFYEIPPERREDRRPPYHEFTAERAYYENIRTPGLYPEEARRDYAARSRERFPELEHY
QGEHFEPRYHEDPRDYRDYRDPFEQDIRKYTYIQRERERERERFEADRSRWSPSHPRRPI
TPAVSPSPSDRAPRDSERRVYSQSSERSGSVSSLSPPHFDKSEKTLLEHASKSDKGEKSS
QLDRVAGAEKTKRAKRKEKGDKEKGEKIKSRKVKGQSPSNLLPDAELEAGFEGGSGRAKG
SDQDAHERQKYKGDGDSIAGNQLPTVHPDTVKSERSEMGKSDTSDMDGKNRLKKHLKSDS
GNDGKDSSVDSDRLAARKRRFADSSGRIIRQKRSRLEEEDGNQSTDLSASATYLKETDSD
KHKDAQRRDSRLKTDKIATQKDGQEDLRGQREKSEGSLDPLEPKRHPGHTSSRRFSHEGN
TDQGSTREQEHHAAFKFVGQTADTDKSTRNKEDHVDIDLSQSYRKQMEQNRRLHQQQQQR
ESDKADKLGSPHGSETEDMEHRSLVHEVGKPPEDVTDNFPSHKLKKLDQFDTDTGIKRER
VYRSFRQKSEDPDWNNTSSPGHQHFPHHAEEDFADHSQKELSRNDDKIHPDLELLVKRTH
NTQVNKPNTPLLSVEEEQQKRWESRVKQDLLPDLNFSRSLSKNIHNRKRLEYGVWHDLEP
GEVRSDSEEDREPKPHSPVPSTSMPFSERPRVDRFSDPKLAHLERNKFYSFALDQTITPD
TKALLERAKSLSSSREDNWSFLDYDSHFASFRNRKDTEKVESTPRPTPSWYMKKKKIRSG
SEDKVDDRKEEPKPEEHERRELFASRFLHSPVFELDSRRLQHLERKHEEPEHTQNQQTGQ
QGTVDGELDSGPVVLFHSRFLELTRLQQQKNKTQQLQEAKGQAVPTDDNKVEEAPVQEQQ
ALQSPETTESVTEPEIKPISPAEEVISEPRLAPTSVTQPVLKDFPPPEEKSVVLNPTTEP
YSTVSIKEELKEEEKENENVVPMHNPTTVTSDSEAVPIAVQESSYSMDRCKLSPSEGKSD
IIEDVKPLRTEQPYRRDSHDEFISSSEPELDPETTQPEVPEATSPIPLSIEEEVDIGKKE
THSTLKEITEPEGEKTLQVSKVQMPIDDTHDEPISPPKEHKTKEMKNKKGKQSPAEVAPV
PVISTSGSEKPATRKSERIDKEKLKRGSSPRAECKSTGKSPIHGSDPDILEQSISFSRAR
RRNVKSVYATPVEDDVPVRSGKEITESPRSARKRVTDKDATQQQNIEQDPPAPTKRGRPP
KNRRQGDESTTVKVEKSKVDNKDTDSNESESGERIPRVSKGKTSPHVTKGSSVQMSTALG
CSSIRKGEKTEVAEADDQEMDFTDDDTLTLQDSSSSCKEDPSVKLEEKKEEKDKQGREMV
KDKDVLNEKACEGKSNGKDADSPASEEKNTPEKDRTVKGKTKLTRTPKSPVLKNLKIRLN
VTEVKDHVSKCTNANKGGSTNEENENAALEKKELQETSKSLISQEMELEQAVENIAKLTD
PGFPTDSHTSPAPQTEVKNDPEEEKPSNPASETELMAAIDSITAEEATASLAQAPPVSAD
VGSEPETQDFVQPAKEDEPETNTAAVQEGTLFPTTPKKGPKGRPKTPKRKPQKQVRKDSK
EGLSISEESSTLLPDSTASSAKIAPETTPSAATATVITPTTWKQEPEPTAAKAADVNAES
ESSSEEQIQHLKSVYPQPKSPICPKTQQVPPECVSPSLSPLANRPNIRPIQTSRTPVSPP
DWLHQSKDTGVSSSPVMQLASKENQPLPSDSENMEIDHGTSDLRTILMKHKNISMPGSSS
IPSNLPTLRDQNPSESNAPSAVVPNKSPLPDSRMPAHPATPIVRPQASLSSPETKSVISV
IASTATSVISRVCNPPEPEDKVNMNIGNPCVDMALPKPTYRPSKDDTGSYHGPSVGDEGG
SAARFIVESPALGTGSCPGLRVNTSEGVVVLSHSGQKTEGPQRISAKISQIPQASAGDME
SQQLVSMPQIKQEMYGHSQSGIQKGPSQTDHGHPGKAQSTLSCIKQEGTGLEKLESSYQS
GSQGVVKRLTQGVGNQQVMSTMYHQEYMPMKHQKKMDSADPHSTDGVKPPWTSAISPAIS
PHLPSPPGNHVGFVTATGDRTPSHISGVKQEPRSPRKSGHPHSPFTKVSSPIGSSSPKGI
PVMLPTGLPAMQQFITGVHHPEQSVIMPPHSVPGGIGRMSPHRVTQSIPVGHLVQGEVRV
NTPPLSVMSYGMHSEPLASPWSGPIQPRPTSPQTVGRDKVLKVNPSSLRSHEGEQDEARR
FHQPGRQSATQLKPENMQSDPRGTLRTGVQLETYMAQRDMRVLLHQQGERSATDPHSGHI
QDTLTPSSTSSSIPLSLSPRAHVLPKGVSEKDITKPLEAKRPHSPLSKDGMMGIRQSGSA
IASPQRVQLMAPGPGGSFPEYSGMYSNPRSIHSQMPETSSVGLNQPPLNVTPAMGADLQA
KPDGKMTQPVNMVQLLTKYPIVWQGLLALKNDTAAVQLHFVCGNKALAHRSLPLQEGGTL
LRIVQRMRLEASQLESVARRMTGECEFCLLLALPCGRDQDDVLNQTQALRTAFINYLQTK
LAAGIINIPNPGSNQPAYVLQIFPPCEFSESHLSQLAPDLLNRISSISPHLMIVITSV
NT seq
9717 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctttgggtgggaaatttacccgaacatgtccgagaggag
aagatcgttgaacattttaaacggtatgggcgtgtggagagtgttaaagttctgcggaag
cgggggtcagagggtggtgtggcagcctttgtggattttgtggatatcaaaagtgctcag
aaggctcacaatgctgtcaacaagatgggggacagggaccttaggactgactacaatgaa
cctgggtcagtcccgagtgctgttcggggccttgaagacagctccccttcgagcagtcga
gatgttacaggattctctaggggaacagttggtccagtgtttggcccacctgtgtccctt
cacaccagagagggacgttatgaacggagactagatggtagctcagaaagccgtgaacgt
gcatatgatcacagcccatatggacaccatgagcgcagtggtactttcgacagacagcgt
cactacaatgctgattattaccgtgatcgttctatgtttgctgctgctggcccagggagc
agtgccattggggggagctttgaggcatcagacccacattttgactctagaattcgagac
cctttctctcttactaatgctacacgacgtgacctctaccgagatgacagaggacgacgt
gttgatagaacttaccatcaccgtcggagccgatcgtctcattcctcccagtcaagacac
ccttccccacaaaggacaggacagacccccaaaactcctcactcccctaaaagagctcct
ttatcccctgggagaggcccacgatctcaatcccgcagcagatcttcaagctctgattct
gtcagcagcacaagcagtacgggcagtggcagtgattcaaacagcagctctagtgatggt
tctcgggcacgttcagttcagtcgtcggcaacacacgcaccacctcagacttctatggtt
cttgattcagatgagccacgtagaagctttggaatcaaagtgcaaaacctaccagtgcgc
tcaacggacacaagtttaaaagatgggctcttccatgaattcaagaaacatggtaaagtg
acctcagtgcagatccatggagcatctgaggaccgctatggtttagtgttcttcagacag
caagaggatcaagagaaagccctcagtgtctccaaaggaaagctgttctttggaatgcta
attgaagtcactgcctggaatggtcctgaaacggagagtgaaaatgagttcaggcccttg
gatgggaggatagatgagttccacccaaaggccacaaggacattgtttataggcaacctt
gagaagacgaccagttatcaacaactccttgatatctttcaacgctttggagaaattgtg
gacattgacatcaagaaggtaaatggagttccccagtatgcctttgtgcagtattctgat
attgccagtgtttgcaaggccataaagaagatggatggcgagtatttggggagcaaccga
ctaaagcttggttttgggaagagtatgcccacaacgtgcgtttggctagatggtttggca
accaatattacagagcaatacctcacacggcatttctgccgctatggacatgtagtcaag
gttgtgtttgataggatgaaagggatggccctcatcctgtacaacaacacagattttgct
caggcagctgtaagggagaccaaaggctggaagattggtggcaataaaataaaggtggat
tttgcaagtcaggagagtcagatggcattctacagatccatgcaggcatctggtcaagac
attagagacttctatgaaattcctcccgaacgaagagaggatcgcagacccccttaccat
gaatttacagcggaaagggcttactatgagaatatacgaacacctggcctctatccagag
gaggctcgaagagactatgctgctcgcagcagggagcgttttcctgaattggaacattat
cagggggaacattttgagccacgttaccatgaagacccaagagactacagggactacaga
gacccctttgagcaagacattcgaaaatacacatatattcaaagggagcgagaaagagag
cgagaacgctttgaggctgaccgcagcagatggagcccttcccatccacggcgacctatt
actcctgcagtttcaccatcaccatctgaccgtgctcccagagattcagaaagacgggtt
tatagccagtcctctgagagaagtggtagtgtgagctcactctcaccaccacactttgac
aaatctgaaaagactttgttagaacatgcctcaaagagtgacaagggcgagaagagcagt
caacttgaccgtgtggcaggtgctgagaaaaccaaacgtgcaaaacgaaaagagaaaggt
gacaaagaaaaaggcgagaaaattaaatcaagaaaagtgaaggggcagtcgccatccaac
ctactacctgatgcagagcttgaggctggttttgaaggagggtcaggaagagcaaaggga
tcagatcaagatgctcatgaaaggcagaaatataagggggatggtgactctattgctgga
aatcagttgccaactgttcaccctgacactgttaaaagtgaaagatctgaaatgggtaaa
agtgatacttcagacatggatggaaaaaatagactcaagaaacatcttaaatctgattct
ggaaatgatggtaaagattcgtcagtggattcagatcgccttgctgccagaaaaagacgc
tttgctgattccagtggaaggattattcgtcagaagagaagtaggcttgaggaagaggat
ggtaatcaatccacagacttaagtgcaagtgcaacatatttgaaagagacagactctgac
aaacacaaagatgcacaacgcagagattcaagacttaaaactgataaaattgccactcag
aaggatggtcaagaggaccttagaggacaaagagagaaatcagagggatctttggaccca
ctggagccaaaacgacatccagggcacacttcgtccagaaggttctcacatgaagggaat
acagaccaaggcagtacaagagaacaagaacatcatgctgctttcaaatttgttggtcag
actgctgacactgataaaagtactaggaataaggaagaccatgttgatattgacctctct
cagagttatcgcaaacagatggagcaaaatagacggttgcaccagcaacagcagcagcgg
gagtctgacaaagctgacaaactaggaagtccccatggtagtgaaacagaggacatggaa
catcgcagtcttgtccatgaagttggcaaaccgcctgaggatgtcactgataattttcca
tctcacaaactaaagaaactagaccaatttgacactgacacaggaatcaagagggagcgt
gtctacaggagttttagacaaaaaagtgaagatcctgactggaacaatacctcctctccg
ggacatcagcattttcctcaccatgcagaggaggattttgcagatcattctcagaaagag
ctaagtagaaatgatgacaaaattcacccggatttggagctgttagtcaaaaggactcat
aacacacaagtaaacaagccaaacactcctttacttagtgtggaagaagagcaacaaaaa
agatgggagagcagagttaagcaagacttgttacctgacctgaacttttctagaagtctg
agtaaaaacattcataatcgcaagcgtttggaatatggtgtttggcatgacttggagcct
ggggaagtacgatcagactctgaagaggacagagagcccaaaccccactctcctgtgccg
tcaacatctatgcctttttctgagaggccaagggttgacagattttcagaccccaaacta
gcacaccttgaaaggaacaaattttactcttttgcacttgaccagaccattacacctgat
acaaaggctctgcttgaacgtgcaaaatcactctcatcttctagagaagataactggtca
ttcttggattatgattcccattttgcaagtttccgcaatagaaaggatactgagaaagta
gaatcaacaccacgacctacaccatcttggtacatgaaaaagaaaaagatacgaagtgga
tctgaagataaagtcgatgacaggaaggaggagccaaagccagaggaacatgaacgcaga
gagctttttgcctcccgcttccttcacagccctgtctttgagctggactccagacgactt
cagcacctagaacgcaagcatgaagaacctgagcatacacaaaaccaacaaactggtcag
caagggacagtagatggtgaacttgactctgggcctgttgtccttttccatagtcgtttt
ttggaactcacacgactacaacaacagaagaataaaacccaacagttgcaagaggcaaaa
ggacaggccgtgccaacagatgataataaagtggaagaagcacctgttcaagagcaacaa
gcattgcagtcacctgaaacaacagaatctgtcacagagccagaaattaaacccatcagt
cctgctgaagaggtgatttctgaacccagactcgcacctacttctgttacccaacctgtg
cttaaagactttcctccaccagaagaaaaaagtgttgtgctaaatccaaccactgagccg
tattccacagtgtctataaaggaagagttaaaggaagaggaaaaagaaaatgaaaatgtt
gtacctatgcacaacccaacaactgtgacatctgattctgaagctgtacctatagcagta
caagaatctagttattcaatggatagatgtaaactgtctccatctgaaggtaaatcggat
attattgaggatgtaaaacctctgcgtacagaacagccataccgccgtgattctcatgat
gagtttattagcagttcagaaccagagcttgatcctgagacaacacaaccagaagtgcct
gaagccacaagtcccataccacttagtattgaagaagaggtggatataggcaagaaagag
acccattccactttgaaagaaataacagagcctgagggagagaagacacttcaagtaagt
aaagtgcagatgcctattgatgacacacatgatgagccaatctcacctccgaaagagcac
aaaacaaaagaaatgaaaaataagaagggcaaacaatcccctgctgaagttgctccagtt
ccggtcatatctacctctgggtctgaaaaaccagcaacacgcaaaagtgagcgcattgac
aaagagaaactgaaacgtggatcatccccaagagctgaatgtaagtccacaggcaaatct
cctattcatggatcagatccagatatcttggagcagagcatatcatttagcagagcacga
cgaagaaatgttaaatctgtgtatgccaccccagttgaagatgatgtaccagttcgttct
ggaaaggaaattacagaatcaccacgttctgcgcgaaagcgtgttacagacaaagatgca
acacaacaacagaatattgaacaggatccacctgctccaactaaacggggccgtcctccc
aagaatcgcagacaaggtgacgagagtactacagttaaagtagaaaagtctaaagtggac
aataaagacactgattcaaatgaatcagagagtggtgaacgaattccaagagtgtcaaaa
ggtaaaacatcgcctcatgtcacaaagggttcatcggttcagatgtccacagccttagga
tgtagttcaataagaaagggagaaaaaactgaggttgctgaggctgatgatcaagaaatg
gattttacagatgatgataccttgactttgcaagattcatcaagttcatgtaaagaagat
ccatcagtgaaacttgaggaaaagaaagaggagaaagacaaacaaggcagagaaatggta
aaagataaagatgttctcaatgaaaaggcctgtgagggtaaatcaaatgggaaagatgca
gattcccctgcatcagaagaaaaaaacaccccagaaaaagacaggactgttaaaggaaaa
accaaattgacaagaacccctaagtctcctgtccttaagaatctcaaaatcagactaaat
gtcacagaggtgaaagatcatgtttcaaagtgcactaatgccaacaaagggggctccacc
aatgaagagaatgaaaatgctgctttggaaaaaaaggaacttcaggaaacatcaaagagt
ttaatttcacaggagatggaattggagcaagctgtggagaatatcgccaaacttacagat
ccaggttttccaacagattcacatacgtcacctgccccacaaacagaagtaaaaaatgat
ccagaggaagaaaaaccatcgaatcctgctagtgagacagaactcatggctgctattgac
tccattactgctgaagaggcaactgcatccttagctcaagcacctccagtaagtgcagat
gtaggttcagaaccggaaacgcaagactttgttcaacctgcgaaagaagatgaacctgaa
acaaatacagctgctgtacaggaggggactctcttcccaaccacacccaaaaagggcccc
aagggaagacctaagacacccaaacgtaaaccccaaaagcaagtaagaaaagattcaaag
gaaggactttcaataagtgaggaatcgagcactcttttaccagatagcacagcttccagt
gcaaagattgctcctgagacaaccccatcagcagcaacagctactgttattacacccact
acttggaagcaagaacctgagcctacagctgccaaggctgcagatgtaaatgcagagtct
gagtcatcctctgaagagcagattcaacatcttaaatcagtttatccccagccgaagagt
ccaatatgcccaaagactcaacaggtaccacctgagtgtgtctcaccttccctgtctcca
ctagccaacagaccaaatatcagacccattcaaaccagtagaacacctgtttctccacca
gattggctccaccagtctaaagatacaggagtttcctcttcacccgtcatgcagttggca
tccaaggaaaaccagcctttaccctccgattctgaaaacatggaaattgatcatggtaca
agtgacctgagaacaattcttatgaaacacaagaatatttccatgccagggagtagttct
attcctagtaatctgcctactctccgagatcagaacccatctgaaagtaatgcgccatca
gctgttgtgccaaataaatcaccactacctgatagtagaatgccagctcatccggccact
cccattgttcgacctcaagcttcactatcatctcctgagacaaagtctgtgatctctgtt
attgcatccactgctacctctgttatcagtcgtgtttgcaaccctcctgagcctgaggac
aaagtaaacatgaacattggaaatccctgtgtagacatggctctacccaaaccaacctat
agacccagcaaagatgatactggttcataccacgggccgtctgttggtgatgagggggga
agtgctgcaaggtttattgttgagagtcccgctcttggtacaggatcttgcccaggtctg
agggtaaatacatctgaaggagtggtagtattgagccactcaggacagaaaactgaggga
ccgcaacggattagtgcgaaaataagtcagatcccacaagcgtcggcaggtgacatggaa
tctcagcagttggtatctatgcctcaaataaaacaggaaatgtatggccattctcagtca
ggtattcaaaaggggccttcacagaccgatcatgggcaccctggtaaggcgcagtcaact
ttgtcttgtataaaacaagaaggcactggtttggaaaaattggagtcttcttaccaatct
ggatctcaaggagtagtgaaacgtctcacacagggagttggaaatcagcaagtaatgagt
accatgtaccatcaagagtacatgccaatgaaacatcagaagaaaatggacagtgccgat
cctcacagcacagatggagtcaaaccaccttggacctctgctataagtcctgcaataagc
ccccatttgccctctccgcctggaaaccatgtaggttttgtaacagccactggtgacaga
actccctcacatatcagtggggtgaaacaggaaccacggtccccacgcaagtcaggtcat
ccacactccccgtttactaaagtgtcctcacccataggttcctcatcacccaagggcata
ccagtgatgttgcccactggccttcctgccatgcaacagtttattactggtgtacatcat
ccagagcagtcggttatcatgccaccacacagtgtgcctggtggcataggacggatgtct
cctcaccgtgttacccagtcaattcctgttggccatcttgtgcaaggagaagttcgggtc
aatactccacctctctctgtgatgagctatggaatgcatagtgagcctcttgcctctccc
tggtcaggtcctattcagccacgccccacctcaccccagactgttggcagagacaaggtg
ctcaaggtaaaccccagttctttgaggagtcatgagggggaacaggatgaagccagacgc
ttccaccagccaggacgacaatctgccacacaactaaaaccagagaatatgcagtcagat
cctcgtgggactttgcgaactggtgtccagttggaaacatacatggcacaaagagatatg
cgtgtgctcttgcaccaacagggagagcgttcggccacagaccctcattctggacacatt
caagatactcttaccccctcttcaacatcttccagcatacccttatccttgtctccaaga
gcacatgttctgcctaaaggtgtgtctgagaaggatataaccaagccattggaggccaag
aggccccactcccctctttctaaagatggaatgatgggaatccgacaatctgggtctgca
attgcatctccccagagagttcagctaatggcaccaggacctggtggctccttcccagag
tactcagggatgtactcaaacccaaggagtatccattctcaaatgccagagacatcgtct
gttggacttaatcagccgccactgaatgttacaccagccatgggtgcagacctccaggca
aaaccagatggcaaaatgacgcagcctgttaatatggtgcagttgctcacgaaataccct
attgtgtggcaaggcctgctggcactgaagaatgacacagctgcagtccagttgcatttt
gtctgtggcaacaaagctttggctcatcgatcactgcccctacaagaaggaggcacattg
cttaggatagtccagagaatgaggctagaggcttctcaactggagagtgtagccagaaga
atgacgggggagtgtgagttctgtcttctccttgctctgccatgtggacgagaccaagat
gatgtcctaaaccagactcaagctcttaggactgctttcatcaactacttgcagacaaag
ttggctgctggtatcattaatatcccgaatccaggttccaatcagcctgcctatgtgcta
cagattttcccaccgtgcgagttttcagagagccacttatcccagctcgcccccgacctt
ctcaacaggatctccagcatctcaccacacctcatgattgtcatcacctctgtgtaa
DBGET
integrated database retrieval system
