Scomber japonicus (chub mackerel): 128357187
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Entry
128357187 CDS
T09718
Symbol
plxnd1
Name
(RefSeq) plexin-D1
KO
K06822
plexin D
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
128357187 (plxnd1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Plexin_cytopl
Plexin_RBD
TIG
Sema
PSI
TIG_plexin
PSI_PlexinA-B
Motif
Other DBs
NCBI-GeneID:
128357187
NCBI-ProteinID:
XP_053173423
LinkDB
All DBs
Position
4:22364423..22428137
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AA seq
1898 aa
AA seq
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MPPSIEIAVLLLGVLVLETRRSASALHIQQAFASPNQTNNFVVDPVSRKVYLATVNTIYQ
LNGTLTIEVEKRTGPVEDNLLCHAPQLPQAPCEHPKSLTDNYNKLLELDREQGVVVACGS
VYQGFCELRKMENISEIAVEFPPQGEKTVFPSMLNIAANHPNASTVGLIFRSHGGNTRLL
VGATYTGAGTQFFPKNHSKEDLRFENTPEIAIRSLNVKDLSRLFTYDINPSEDNVFKIKQ
EVKTKNKLNFVHAFMQKSYSYIAFNNDAKMGHKESQPNSILARICLDTETPRKSTGPESR
KLTESYIQMPLQCGFNGNIYNRLMSVYPAEIHTEDGKSSEPYMFGVFSKGDRKSALCAFK
FGDIEEEIRQGRRNCSNSPSSDVQVLDSVIQGSGAACIMKGNLVLQPEQLDCGAAHLQHP
LALRRPLKAIPLFEYSGLSSVSVDNVHNRTVVFLGTSNGRLRKLTLLANMTLANQWTLKL
PASEPVHHIMTFDPNDRNFLYLMTSHHMLRVKVSDCDQWRICSDCLGAGDAHCGWCTLEN
RCTTQRECTQGLSARSWISMSEGPQQCPSMTLTPPEISISADIKDVGILINGSVPDLVGS
QVECEYGPGFSTAATVHLDSGPAQIQTCPLLPRENYQPIPLGTDHLTVSVAIKVNGTSVV
SGDFIIYDCERTGIIHPKTSCVSCLSTRWKCYWDQEKHLCVSSKDESMHNLLEKADSCPS
LVATEVAPSPSGMIQDFTLSLINIQEGEKLECDFGTDQRYEATWLNSSTVKCSGVTLSTN
QRSHIYHLNLRRRGYFNGQANVFIDSPQPMKVEVYNCGVDSSDCSQCWGREDQGHLCAWC
ENSCRQRDDCQPFKDQCPTPEIHKIFPLRGPVEGSTRLTVQGKNLGRRASVVKVSIGDVP
CDLLPELYNVSVELVCVTGASAYERTDIVRVHVDQSGMGMSKESFSYLVPKLMYIEPRKG
SRAGGTRVIIGGEHLDIGSQVRVKVNNTQECIITEKTDETIECTMPPALQANTDSVAVCV
EFENLPCQSAELSTTYTYEKNPIISLIHPKKSYLSGGRTITVTGHGFDLVQSVTMQVLGI
GQTHCSVLSQSMITCPSPPSSQSQQTSVQFFLNEVLYTGDSPSFSEDEAEEEEVEPHKGH
FPLEYVEDPQFFTANKEKLIKHHPGEPLTLIINKGPSDLELVPEEYSVMIGSYPCNISFH
NDQLFHCTINGLLSSSEGELPVTVQLGNFRHTIAKVQLGGSELAIVVSIVVCCVLLLLCT
VALVVYCTKSRRAERYWQKTLLQMEEMESQIREEIRKGFAELQTDMTDLTKELNRSQGIP
FLEYKQFVTRTFFPKMCSDYEKSLVQPVYENDGLGPRALPETHPLLQDWKATNNTRPNVE
EGITLFSTLLNNKHFLITFVHALEQQKDFAVRDRCSLASLLTIALHGKLEYYTSIMKDLL
VDLIDASASKNPKLMLRRTESVVEKMLTNWMSICMYSYLKETVGEPFFLLLCAIKQQINK
GSIDAITGKARYTLNEEWLLRENIEAKPQNMNVSFQGCGMDSLSVRVMNTDTICQVKEKI
IEAFYKNLPFSQWPRAEDVDLEWFDSGSNSKLLQDLDNSSVMEDGRKKLNTVFHYLIPEG
ASLAMSMKDKKENTLGRVKDLDTEKYVHLVLPHDELMENRKSHRQSHRKKVLPEIYLTRL
LSTKGTLQKFLDDLFQAILSIPPDRPPLAIKYFFDFLEEQADKRGITDPDTLHIWKTNSL
PLRFWVNILKNPQFVFDIDKTDHMDACLSVIAQAFIDACSISDLQLGKDSPTNKLLYAKE
IPEYKKRVQCYYQQIQEMAPLSEQEMNAHLAEESRKYRNEFNTNLALTEIYKYAKRYRNQ
VVNALESNPTARRTQLHHKFEQVIALVEDNIYECCSEA
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgcctccttcgatagagatagctgttctgcttctcggcgtcctggttttggagacgcgc
cggagtgccagtgcgctgcacatccaacaggcattcgcgtctccaaatcagactaataac
ttcgtggtggacccggtgtccagaaaggtctacctggccaccgtcaacacaatctaccag
ctgaacgggaccttgaccatcgaggtagagaagaggaccggtccggtggaagacaacctg
ttgtgccatgcgccacagcttccacaggctccgtgcgagcatcccaaatccctcactgat
aactacaataagctcctggagctggaccgagagcaaggggtagtggtggcatgtggatcc
gtgtaccaaggcttctgtgagctcagaaaaatggagaatatttcggagatagcggtggag
ttcccaccacagggcgagaagaccgttttccccagcatgcttaacattgctgccaatcac
ccaaatgcatccactgtggggctcatcttcaggagccacgggggaaacacccggcttctc
gtcggggcgacctacacaggggctggtacccaattcttccccaagaatcacagcaaggag
gacctgcgctttgaaaacaccccggagatcgccatccgctctttgaatgtcaaggattta
tcccgacttttcacctatgacattaacccctcagaggataatgtgttcaagatcaaacaa
gaggtgaaaaccaaaaacaagctgaacttcgtccacgcttttatgcagaagagttattca
tacatagccttcaacaatgacgcgaaaatgggccacaaggaaagccagccaaacagcatc
cttgccaggatatgtctggataccgagacccccagaaaatccaccggcccggagagcagg
aagctcacggagtcctatattcagatgcccctacagtgtggatttaacgggaacatttac
aaccggttgatgtccgtgtaccccgcggagatccatacagaggacggtaagagctcagaa
ccgtacatgttcggagtgttctccaagggtgacagaaagtctgccctgtgcgccttcaag
tttggagacatcgaggaagagatcagacagggccgcaggaactgctctaactctcccagc
agcgatgttcaggtgttggacagcgttatccagggctccggggcagcctgcattatgaag
ggaaacctggtgctgcagccggagcagctggactgcggtgcggcccacctgcagcaccca
ctggccctacgacggcccctgaaggccattcctctgtttgaatactctggccttagttcg
gtctctgtggacaatgtacacaatcgcactgtggtttttctaggaaccagtaatggacgc
cttcgtaagctgaccctcctagcgaacatgaccttggctaaccagtggacactgaagctg
ccagccagtgaacccgtccatcacatcatgaccttcgaccccaacgacagaaacttcctt
tatctcatgacctctcaccatatgctgagggtgaaagtgtcagattgtgaccagtggagg
atctgcagtgactgtctgggagcaggtgacgcccactgtggctggtgtactctggaaaat
cgatgcaccacccagagggaatgcactcaggggctgtcagcacgttcctggatcagcatg
agtgaaggcccacagcagtgtccgtccatgaccctgacacccccagagatcagcatctct
gcagacataaaggatgtcggcattctgataaacggcagtgttcctgatctggtcggctcc
caggtggagtgtgaatatgggccggggttttctacagctgccacagtgcacctggactcc
ggtccagctcagatccagacctgtcccctgctccctcgggaaaactaccaaccaatcccc
cttggcacagatcatctgactgtttctgtggcgataaaagtgaacggcacatccgtagtt
tctggtgacttcatcatctatgactgtgagaggactggaataatacacccaaagacgtca
tgtgtgagctgcctgagcaccaggtggaagtgttactgggaccaagagaagcacctatgt
gtctccagtaaagatgagtcaatgcacaacctgctggagaaggcagattcctgccccagc
ctggttgccacagaggttgctccatcaccatcaggaatgatccaggacttcaccttatcc
ctgatcaacatccaggagggggagaagctggagtgtgactttgggacagatcagcgatat
gaggcaacatggctgaacagctcgacagtcaagtgcagtggagtaacactgtccactaat
cagaggagtcacatttaccatctcaacctgaggaggagaggatactttaatggacaggcg
aacgttttcattgacagccctcagcccatgaaagtggaggtatacaactgtggagtggat
agttctgattgttctcagtgctggggccgggaggatcagggacacctctgtgcctggtgt
gaaaacagctgtaggcagagggatgactgccagccattcaaagatcaatgtccaactcct
gagatccacaagatcttccccctcaggggtccagtggaaggaagcacccggctgacagta
cagggcaagaatcttggtcgcagggcttcagtagtaaaagtctccattggggatgttcct
tgcgatcttctgcctgagctctacaatgtctctgtagagctggtgtgtgtcactggggca
tctgcatacgagaggacggatattgtccgagtgcatgtggatcagagtgggatggggatg
tcaaaggaaagcttctcatacttagtaccaaaactgatgtacattgagcccaggaagggc
tctcgtgctggaggaaccagagtgatcatcggaggtgaacacctggacatcggctctcag
gtcagagtcaaggtcaacaacacgcaggaatgcatcattacagagaaaacagatgaaacc
attgagtgcaccatgcctccagccttgcaggcaaacactgactcagtagcagtgtgcgtg
gaatttgaaaaccttccctgtcagagtgccgaacttagtaccacatacacttatgagaag
aaccccattatcagcttaatccaccccaaaaagagctacctcagtggtggcaggaccatc
acagtgacaggccatggttttgatctggtgcagagtgtcaccatgcaggtgctgggaatt
ggacaaacacattgctcagtgctttcccagtcgatgatcacctgcccgtccccgccatct
agccagtcccagcagacctcggtgcagttcttcctgaatgaagtcctctacaccggagac
agcccctcgttctctgaggatgaggcagaggaagaggaggtggagcctcataaaggtcac
ttccccctggagtacgtggaagaccctcagttcttcacagccaacaaggagaaactgatt
aaacaccaccctggagagccactgacactcatcatcaacaaagggccgagcgatctggaa
ctggtgccggaagaatactcagtgatgattggctcctatccttgtaacatcagcttccat
aacgaccagctgtttcactgcaccatcaacggactgctgagctctagcgaaggagagctg
cctgtcactgtgcaactggggaactttcgtcacaccatagccaaagtacagctgggtggc
agtgagctggccatcgtggtttccattgtggtgtgctgtgtgctgctgttgctgtgcact
gtggctcttgtggtgtactgcacaaagagccgaagggcagaacgctactggcagaaaact
ctactgcaaatggaggagatggagtcccagatcagagaggagatacgtaaaggctttgct
gagctgcagacggatatgacagacctgaccaaggagctgaatcgcagccagggtatccca
tttttggagtacaaacagtttgtcacacgcacgttcttccccaagatgtgctctgattat
gagaagagtctggtccaacccgtctatgaaaatgatggtctgggacctcgagctctgcca
gagacccacccactgctacaggactggaaggccaccaacaacacgaggcctaacgtagag
gagggcatcactctgttctccactctgctcaataacaagcacttcctgatcacatttgtc
cacgccttggaacagcagaaggactttgctgtacgagacagatgcagcctggcatcactg
ctcaccatcgccctccatggtaagcttgagtactacaccagcatcatgaaagatctgctt
gtggacctgattgacgcctcagcttccaagaatcccaaattgatgctgcgccgcactgag
tctgttgtggagaaaatgctgaccaactggatgtctatctgcatgtacagctacctcaag
gaaacagtgggtgagcctttctttctgctgctgtgtgcaatcaagcagcagatcaacaag
ggctccatagacgccatcacaggaaaggctcgctacaccctcaacgaggagtggctgctt
cgtgagaacattgaggccaagccacagaacatgaacgtgtctttccagggctgtggcatg
gactcgctgtccgtcagggtcatgaatacagacacaatctgccaggtgaaggaaaaaatc
atagaggccttttataaaaacctgccattctcccagtggccccgagcagaggatgtagac
ctggagtggttcgactctggtagcaacagtaagcttctgcaggacctggataactcttca
gtgatggaggatggccgaaagaaactcaacacagttttccattacctgatcccagagggg
gcatcgctggctatgagcatgaaagacaagaaagagaacaccctggggagagtcaaagat
ctggataccgagaagtatgtacacttggtcctacctcacgatgagctaatggagaacagg
aagtcgcacagacagagccacaggaagaaggtcctacctgaaatctacctgacacgccta
ctgtctaccaagggaactcttcagaagttcttggatgacctctttcaggctatcctcagc
atccctccagaccggccccctctggcaatcaaatacttctttgacttcctggaggagcag
gctgacaaacggggcatcacagatccagacaccctgcacatctggaaaaccaacagttta
cctctgcgtttctgggtgaacatcctgaagaatcctcagtttgtgtttgacatcgataag
acggatcacatggacgcctgtctgtctgtcatcgcccaggccttcatagatgcctgctcc
atatctgacctgcagttaggcaaggactcccctaccaacaaactgctgtatgccaaggag
attcctgagtataagaagagggtgcagtgctactaccagcagatacaggaaatggcacct
ctcagcgagcaggagatgaacgctcacctggctgaggagtcacgaaaatacagaaatgaa
ttcaacaccaacctggccttgacagaaatctacaaatatgccaagagatacagaaaccag
gtggtgaacgcgctggagtctaaccccaccgcacgtcgcactcagctgcaccacaagttc
gagcaggtcattgccctcgtggaggacaacatctacgagtgctgcagtgaagcctga
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