Scomber japonicus (chub mackerel): 128358539
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Entry
128358539 CDS
T09718
Symbol
nr1h4
Name
(RefSeq) bile acid receptor
KO
K08537
farnesoid X receptor
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128358539 (nr1h4)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sjo03310
]
128358539 (nr1h4)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128358539 (nr1h4)
Nuclear receptors [BR:
sjo03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
128358539 (nr1h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
MRP-L28
Motif
Other DBs
NCBI-GeneID:
128358539
NCBI-ProteinID:
XP_053174838
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All DBs
Position
5:21234913..21249040
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AA seq
485 aa
AA seq
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MNEWVGQDINVVGPLQIPPSDEFSISEGSHLFDILADQGSPLLQDPDILPFSSYPSMQYP
SMEPTMSSTPYYSSQNYYPQYNGDEWYSHTGIYELRKGPLEVNYDAEREDVSTVVPAVCK
RTRHIPQAGRVKGEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYKCKSGGNCE
MDMYMRRKCQECRLRKCKEMGMLAECLLTEIQCKSKRLRKNTKASPGQSTGDETEGADHT
DNKQVTSTTKLSKEKVEITKEQRALMKVIVEAYNRHQIPQDVAKKLLQEQYSAEENFLLL
TEMATSQVQVLVEFTKNIPGFLSLDHEDQIALLKGSAVEAMFLRSAQVFSRKMPTGHSEV
LEERIRKSGISEEFITPMFNFYKSIGELHMAQEEQALLTAITILTPDRPYVKNQQAVERL
QEPMLDMLRKLCVLQHPQEQQYFARLLGRLTELRTLNHYHAEMLTSWRMNDHKFTPLLCE
IWDVQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtgggtgggccaggacatcaatgtggtgggaccactgcaaatcccacccagc
gatgaattctcaatctcagagggctcccacttgtttgatattctggcggatcagggcagt
cctctactgcaggatcccgacatattacccttcagcagctaccccagcatgcaataccca
tccatggaaccaaccatgtcttccacaccatactactccagtcagaactactaccctcaa
tacaatggagatgagtggtactcacacacagggatatatgaactgaggaaaggacccctt
gaggtcaattatgatgcagagagggaggatgtgtccactgtggtccctgctgtgtgcaag
aggacccggcacatcccacaggctggaagggtcaaaggagaggaactgtgtgttgtgtgt
ggagacaaggcctctggataccactataacgctcttacctgtgagggatgtaaaggtttc
ttcagacggagtataacaaagaatgctgtatacaaatgcaagagcggtggaaactgtgag
atggatatgtacatgcgcaggaaatgccaggagtgccgactaagaaagtgcaaggagatg
ggcatgctggcagaatgtctgctgacagagatccagtgtaaatctaaaaggctgcgcaag
aacaccaaggcctccccaggacagtcaactggagatgagacagagggggcagaccacaca
gacaacaaacaggtcacctcaactaccaaactgtcaaaggaaaaagttgaaattacaaaa
gagcagcgtgcgctcatgaaagtcattgtagaggcttacaatagacatcaaattcctcaa
gatgtggccaaaaaactgctacaagaacagtacagcgcagaggaaaacttcctcctattg
acagaaatggcaacaagtcaagtccaagtcctggtggagtttacaaaaaatattccaggc
tttctgtctctggatcatgaagatcaaatcgctctgctgaaaggttcggctgtggaagcc
atgtttctgcgctctgctcaggttttcagcagaaagatgcccaccggacactcagaagtt
ttggaagagagaatacgcaagagtggtatatcagaggaatttatcacaccaatgttcaac
ttttataaaagcatcggtgaactccacatggcgcaggaggaacaggccctcctcaccgcc
ataaccattctgacaccagacaggccttatgtgaagaatcagcaggctgttgagagactt
caggagcccatgctggatatgctgaggaagctttgtgtcctgcagcatccacaggaacag
caatactttgctcgtctcctgggcaggctgacagagctgaggacactcaaccactaccac
gcagagatgctcacatcctggaggatgaatgaccacaagtttaccccactgctctgtgag
atctgggatgtacagtga
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