Scomber japonicus (chub mackerel): 128362571
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Entry
128362571 CDS
T09718
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128362571
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Protocadherins
128362571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
128362571
NCBI-ProteinID:
XP_053179335
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Position
8:16719820..16722285
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AA seq
821 aa
AA seq
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MTKRMGYRDWRWQALWWHHFFLLWTTIDGQTRYSIPEELKQGSVVGNLAKDLGLGLSDIF
DRKLRVASEAGEQYFSVDAGKGELVVNDRIDREALCGQSASCLLPLQVVLANPLILHRIE
VEIKDINDNSPRFHTKEMSLKIAESAAVGTRFLLESAEDSDVGSNSLKSYTLTKNDCFTL
KMKEVEDGKTVPELVLEKPLDREKKAVHRLLLTALDGGNPVMSGTSQIIITVLDVNDNFP
VFDKNTYKVSLEENTAKDTFVIKIAATDADEGPNGEVEFSFSPRTPDSVSSVFEINSLTG
EIYLKGDLDYERASSYKIEITAKDRGVPVMESHCRVQIDVVDVNDNTPEIILTSEPQPVR
EDAPSGTVVALLNARDADSGNNSKVTLKLPKGSFFTLKPSFSNNYALVTSGRLDRETFSE
YNIEITATDSGSPPLSSKKIIPVSISDVNDNPPVFTQPSYNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLSHQRMPRSAKPGYLVTKVTAVDAD
SGHNAWISYKLAEATDASLFTVNQYTGEVRTKRPVSEQDDSSQRLLIEVKDDGEPVQSAT
VTVSILLEDGLHEPILDLRQKTMEPSKKTGRITLYLILSLASVSVLSLVTFLILTVKCIR
SSRSSGSCCMRRSDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCMSPMS
EYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQVSR
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaatgggataccgagactggagatggcaggcgctttggtggcatcatttc
tttctcttgtggactacaatagacggacagactcgatacagcatcccagaggaactaaaa
cagggatctgtggtaggaaatctagccaaagatctgggtttgggactatcagacattttt
gaccgtaagctgcgtgtcgcctctgaggctggtgagcagtatttcagtgtggatgcgggg
aagggcgagctggtggtgaatgacaggatagatagagaagctttatgtggacaaagcgcc
agctgtttgctgcctttgcaggttgtccttgcgaaccctctaattttacatcggatcgag
gtagaaataaaagatataaatgataattcacccaggtttcatacaaaagaaatgtctttg
aaaattgctgaatccgcagcagtcgggactcgttttcttttagaaagtgcagaggattca
gacgttggaagtaattcactaaaatcctacactttgactaaaaacgactgttttacattg
aaaatgaaagaggttgaagatggcaaaacggtcccggagctagtgttagagaaacctctt
gaccgggagaagaaagccgttcatcggctactactgaccgcattagacgggggaaaccca
gtcatgtctggtacctcgcagataattatcactgtgctggacgtaaacgacaattttcca
gtatttgataaaaatacatataaagtttccttagaggagaacactgcaaaagatacattt
gttatcaaaatagcagcaactgatgctgacgagggaccaaacggagaagttgaattctct
tttagcccccgaacaccagattccgtttcatcagtttttgagataaattcattaacagga
gaaatatatttgaaaggagatttagattatgaaagagcctcgtcctataaaatagaaata
actgctaaagacagaggggttccagtgatggagagtcactgtcgtgtgcagatagatgtt
gttgatgttaatgataatactcctgaaattatccttacctctgaaccgcagccagtgcgc
gaagacgcaccaagtggcacagtagtggctttgctcaatgcgcgtgacgctgactccggt
aataatagcaaagtgacattaaaactaccaaaaggttcttttttcactctaaaaccctca
ttttctaataattacgcactggttaccagtggccgtttagaccgagagactttctctgag
tataatattgaaataacagccactgattcaggctctcctcctctgtccagtaagaaaatt
atacctgtcagcatctctgatgtgaatgataaccctcctgtattcactcagccctcctat
aatgtgtatttaaaagagaatggggtaccaggctctatactatactcagtatcagcatct
gacctggattttggtgaaaacgctaaaatctcttattctatactggactctaaagtgcag
gacgtctctgtctcgtcttatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattcaggttcaggcaaaggaccag
ggctctccgtctctcagcagcaacgctactgtccatgtttttatcctggaccagaacgac
aatgcccccgctgttatttacccttcctccgctgccctgggctccctctctcatcagagg
atgccccgctccgctaaaccgggttacctggttactaaggtgacggccgtggacgctgac
tcgggccataacgcctggatctcctacaaactggcagaggccacagacgcctctctgttc
acagttaatcagtacacaggagaggtgaggactaaacgccctgtgtccgagcaggatgac
tcctctcagaggctgcttatagaggtcaaggacgacggggaaccggtccagtccgccaca
gtcacggtgtccatcttgctggaggacggcctccatgagcccatcttggacctccgacag
aaaacgatggagccgagcaagaaaaccgggagaatcaccctttatttgattctctctctg
gcctcggtgtccgtgctgtctctggtgacttttctcattttaacggttaaatgcatcagg
agcagcagaagcagcggtagttgctgcatgaggcggagcgactgtgatgattacaagaac
cccaacagaaacctgcagattcagctcaacactgatgggcctataaagtacgtggaggtc
ctgggaggagacatgttgtctcagagtcagtccttcaggtcctgtatgtctccaatgtca
gagtacagtgatttcactttaattaaacccagcagcaccactgactttaaggaggtgatc
agtgttcttgatgcttctttacctgacagcacctggacctttgagagccaacaggtgagc
agataa
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