Scomber japonicus (chub mackerel): 128363462
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Entry
128363462 CDS
T09718
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128363462
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Protocadherins
128363462
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
128363462
NCBI-ProteinID:
XP_053180439
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Position
8:16730564..16733047
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AA seq
827 aa
AA seq
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MTKRMGYRDWRWQALWWHHFFLLWTTIDGQTRYSIPEELKQGAVVGNLAKDLGLGLSEIF
DRKLRVASEAGKQHFSVDAGKGELVVNDRIDREALCGQSASCVLPLQVVIEDPLQLHRIE
VEIRDINDNSPSFLSNQLSLKLAESAAVGTRFPLESAMDPDVGSNSLKSYTLSKNECCSL
KIKEIEGGKTVPELVLEKPLDREKKAVHKILLTALDGGNPARSGTSQITISVLDINDNFP
VFEKNVYKVTLSEKSVKGAVIIKPKATDADEGLNGEIEFSFGTRTPDSVLSVFDINSLTG
EIVLKGELDYETTKSYDIDVTAKDKGSPEMEGHCRVQIDIIDFNDNFPEIVLTSQPKPVR
EDSPSGTVVALISARDLDSGDNGEVTLQLPKGSPFNLKPSFSNNYALVTSGHLDRETFSE
YNIEITATDSGSPPLSSKKIIPVSISDVNDNPPVFTQPSYNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLSHQRMPRSAKPGHLVTKVTAVDAD
SGHNAWISYKLAEATDASLFTVNQYTGEVRTKRPVSEQDDSSQRLLIEVKDDGEPVQSAT
VTVSILLEDGLHEPVLDLRQKTMEPSKKTGRITLYLILSLASVSVLSLVTFLILAVKCIR
SSRSSGSCCMRRSDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCMSPMS
EYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQVSRKSLGIV
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaatgggataccgagactggagatggcaggcgctttggtggcatcatttc
tttctcttgtggactacaatagacggacagactcgttacagcatcccagaagaactgaaa
cagggcgctgtagtaggaaatctagccaaagatctgggtttgggactatcagagattttt
gaccgtaagcttcgtgtcgcctctgaggctggtaagcagcatttcagtgtggatgcgggg
aagggcgagctggtggtaaatgacagaatagacagagaggcgttatgtggacaaagcgcc
agctgtgttctacctctgcaagtagttattgaggacccactacagttacaccgaattgag
gttgaaatacgagatattaatgacaattctccaagtttcctttcaaatcagttatctttg
aaattagccgaatcagcagcagttggcacacgctttcctttggagagcgcaatggacccc
gatgttggaagcaattcactcaaatcatatactcttagtaaaaatgagtgttgttctctc
aaaataaaagaaatagagggtggaaagaccgttcccgagcttgttttagaaaagcctctt
gaccgagagaaaaaagcagttcacaaaatattactaacagcgttagatggggggaatcca
gcaagatccggaacctcacaaataaccataagtgtgcttgacataaatgataacttccca
gtgtttgaaaaaaacgtttacaaagtcaccttgagtgaaaaaagtgtaaagggggctgtt
attatcaagcccaaagcaacagatgcagatgaaggtttaaatggtgaaattgaattctca
tttggcactcggacaccagattctgtattgtcagttttcgatattaactctttaaccggt
gaaatcgttcttaaaggagagttagattacgaaactactaagtcatatgacattgatgta
actgcaaaagataaaggcagccctgaaatggagggccactgtcgcgtacaaattgatatt
attgacttcaatgataattttccagaaattgtcctcacttctcagccaaagccagtacgc
gaagactcgcccagtggcaccgtagtggctttaatcagtgctcgagaccttgactctggt
gataacggtgaagtgacattacagctccccaagggttctccttttaatctgaaaccctct
ttttctaataattacgcactggtcactagtggtcatttagaccgagagacattttcagag
tataatattgaaataacagccactgattcaggctctcctcctctgtccagtaagaaaata
atacctgtcagcatctctgatgtgaatgataatcctccagtgttcactcagccctcctat
aatgtgtatttaaaagagaatggggtaccaggctctatactgtactcagtatcagcatct
gacctggattttggtgaaaacgctaaaatctcttattctatactggactctaaagtgcag
gacgtttctgtctcgtcttatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattcaggttcaggcaaaggaccag
ggctctccgtctctcagcagcaacgctactgtccatgtttttatcctggaccagaacgac
aatgcccccgctgttatttacccctcctccgctgccctgggctccctctctcatcagagg
atgccccgctccgctaaaccgggtcacctggttactaaggtgacggccgtggacgctgac
tcgggccataacgcctggatctcctacaaactggcagaggccacagacgcctctctgttc
acagttaatcagtacacaggagaggtgaggactaaacgccctgtgtccgagcaggacgac
tcctctcagaggctgcttatagaggtcaaggacgacggggaaccggtccagtccgccaca
gtcacggtgtccatcctgctggaggatggcctccatgagcccgtcttggacctccgacag
aaaacgatggagcctagcaagaaaaccgggagaatcaccctttatttgattctctctctg
gcctcggtgtccgtgctgtctctggtgacttttctcatcttagcggttaaatgcatcagg
agcagcagaagcagcggtagttgctgcatgagacggagcgactgtgatgattacaagaac
cccaacagaaacctgcagattcagctcaacactgatgggcctataaagtacgtggaggtc
ctgggaggagacatgttgtctcagagtcagtccttcaggtcctgtatgtctccaatgtca
gagtacagtgatttcactttgattaagcccagcagcaccactgactttaaggaggtgatc
agtgttcttgatgcttctttacctgacagcacctggacctttgagagccagcaggtgagc
agaaaatcactaggtattgtgtga
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