KEGG   Scomber japonicus (chub mackerel): 128364580
Entry
128364580         CDS       T09718                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo04010  MAPK signaling pathway
sjo04137  Mitophagy - animal
sjo04141  Protein processing in endoplasmic reticulum
sjo04210  Apoptosis
sjo04217  Necroptosis
sjo04621  NOD-like receptor signaling pathway
sjo04622  RIG-I-like receptor signaling pathway
sjo04920  Adipocytokine signaling pathway
sjo05132  Salmonella infection
sjo05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    128364580
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    128364580
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    128364580
  09143 Cell growth and death
   04210 Apoptosis
    128364580
   04217 Necroptosis
    128364580
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    128364580
   04622 RIG-I-like receptor signaling pathway
    128364580
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    128364580
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    128364580
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    128364580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sjo03019]
    128364580
   04121 Ubiquitin system [BR:sjo04121]
    128364580
Enzymes [BR:sjo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     128364580
Messenger RNA biogenesis [BR:sjo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     128364580
Ubiquitin system [BR:sjo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    128364580
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-RING_4 zf-C3HC4_2 zf-RING_5 Sina_ZnF zf-C3HC4_4 Tropomyosin zf-RING_6 MATH GCSF zf_C2HC_14
Other DBs
NCBI-GeneID: 128364580
NCBI-ProteinID: XP_053181117
LinkDB
Position
9:complement(34607147..34620747)
AA seq 566 aa
MAAQEPSPPSSLEGNKPGFPKKILANNLEDKHLCNSCQKVLRRPLQAQCGHRFCSFCFNK
IVSSGPQKCSACIREDLFEEPTSILKQGGAFPDNAARREVEALAAVCPNEGCTWTGTIKE
FEASHEGHCDFMIILCPSCKELMRANEQERHNERECPERTLNCKYCKEPFLLKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFKAPCRFHVVGCDTSVEKEKIHDHERQCS
YEHLNLLLHFIMGIKVSLESLQPQSLEVASHKLQELHQSLRDLEMKMSQLGGCAPVQGAC
APTLTTSFTPLPSAMGAALELQLQSEKTKVAELSRRCQDLELKVSTFENIVCVLNREMER
SCTTMEAYNRQHRLDQDKIEILNNKVRQLERTVSLRDLSIVEMEGKMREMSAATYDGIFV
WKISDFTKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMR
GHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQRPVSDMNIASGCPLFCPL
SKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq 1701 nt   +upstreamnt  +downstreamnt
atggctgcacaggagccgtctccaccatcttccctggaaggcaacaaacctggctttcct
aagaaaattctggccaacaacctcgaagacaagcacttgtgcaattcgtgccagaaagtc
ctgagaaggcccttgcaagcccaatgcggtcaccgcttttgttcgttctgtttcaacaaa
atagtgagttccgggccacagaaatgcagtgcgtgcatcagggaggacttgtttgaagaa
cccacctccattctcaagcaaggtggtgcgtttccagacaatgcggctcggagagaagtg
gaggctttggcggccgtgtgtcccaacgaaggctgcacgtggacggggactatcaaagaa
tttgaggccagccacgagggtcactgtgacttcatgatcatcctgtgtccttcctgtaaa
gagctgatgagagctaatgaacaggaacgacacaatgagcgagaatgtccagagaggacg
cttaactgcaaatactgcaaagaacccttccttctaaagaacatcaaggctcatgatgaa
atctgtccaaagtacccgatgatttgtgaaggctgcgcaaagaaaaaaatccccagagaa
aaatatgtggaccatattaagttctgcagtaaatttaaagcaccatgcagatttcatgtt
gttggctgcgatacgtctgtggagaaagagaagatccatgaccatgagcggcagtgttcg
tatgaacacctcaacctgctcctgcatttcatcatgggcatcaaagtgagccttgagagc
ctgcagccccagagcctagaggtggccagccataagctgcaggagcttcaccagtccctc
agggacctcgagatgaagatgagccagctgggtgggtgtgctcccgtgcagggtgcatgc
gcccccaccctgaccacctccttcacaccactgcccagcgccatgggcgccgccctagaa
ctgcagctccagagcgaaaagaccaaggtggctgagctgagccggcgctgccaggacctg
gagctcaaagtgagcacattcgagaacatcgtctgtgtcctcaaccgagagatggagcgc
tcctgcaccaccatggaggcctacaaccgccaacacagactggaccaggacaagatcgag
atcctcaacaacaaggttcgtcagctggagaggacagtgagtctgagggacctgtccatc
gtggagatggaagggaaaatgagagagatgtctgcagccacatacgatggcatctttgtc
tggaagatctctgatttcaccaagaagaggcaggacgccgtggctggccgcgcccctgct
atgttctctcccgccttttataccagtaaatacggctacaagatgtgcttgcggatctac
ctgaatggagacggaacgggccgaggcacccacttatctctgttctttgtggtgatgaga
gggcacagcgacgcactcctcaagtggccttttaaccagaaggtcaccctaatgctgctc
gaccagaacaacagggagcacataatcgatgccttccggcccgacatctcctcctcatcc
ttccagaggcctgtcagcgatatgaacatcgccagcggctgcccactcttctgtccgctc
tccaagctggactctaaaaactcctacattcgcgacgacaccatcttcatcaaggccatt
gtagacctcaccgggctctag

DBGET integrated database retrieval system