Scomber japonicus (chub mackerel): 128364580
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Entry
128364580 CDS
T09718
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04010
MAPK signaling pathway
sjo04137
Mitophagy - animal
sjo04141
Protein processing in endoplasmic reticulum
sjo04210
Apoptosis
sjo04217
Necroptosis
sjo04621
NOD-like receptor signaling pathway
sjo04622
RIG-I-like receptor signaling pathway
sjo04920
Adipocytokine signaling pathway
sjo05132
Salmonella infection
sjo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128364580
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128364580
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128364580
09143 Cell growth and death
04210 Apoptosis
128364580
04217 Necroptosis
128364580
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128364580
04622 RIG-I-like receptor signaling pathway
128364580
09152 Endocrine system
04920 Adipocytokine signaling pathway
128364580
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128364580
09171 Infectious disease: bacterial
05132 Salmonella infection
128364580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128364580
04121 Ubiquitin system [BR:
sjo04121
]
128364580
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128364580
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128364580
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
128364580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-RING_4
zf-C3HC4_2
zf-RING_5
Sina_ZnF
zf-C3HC4_4
Tropomyosin
zf-RING_6
MATH
GCSF
zf_C2HC_14
Motif
Other DBs
NCBI-GeneID:
128364580
NCBI-ProteinID:
XP_053181117
LinkDB
All DBs
Position
9:complement(34607147..34620747)
Genome browser
AA seq
566 aa
AA seq
DB search
MAAQEPSPPSSLEGNKPGFPKKILANNLEDKHLCNSCQKVLRRPLQAQCGHRFCSFCFNK
IVSSGPQKCSACIREDLFEEPTSILKQGGAFPDNAARREVEALAAVCPNEGCTWTGTIKE
FEASHEGHCDFMIILCPSCKELMRANEQERHNERECPERTLNCKYCKEPFLLKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFKAPCRFHVVGCDTSVEKEKIHDHERQCS
YEHLNLLLHFIMGIKVSLESLQPQSLEVASHKLQELHQSLRDLEMKMSQLGGCAPVQGAC
APTLTTSFTPLPSAMGAALELQLQSEKTKVAELSRRCQDLELKVSTFENIVCVLNREMER
SCTTMEAYNRQHRLDQDKIEILNNKVRQLERTVSLRDLSIVEMEGKMREMSAATYDGIFV
WKISDFTKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMR
GHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQRPVSDMNIASGCPLFCPL
SKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaggagccgtctccaccatcttccctggaaggcaacaaacctggctttcct
aagaaaattctggccaacaacctcgaagacaagcacttgtgcaattcgtgccagaaagtc
ctgagaaggcccttgcaagcccaatgcggtcaccgcttttgttcgttctgtttcaacaaa
atagtgagttccgggccacagaaatgcagtgcgtgcatcagggaggacttgtttgaagaa
cccacctccattctcaagcaaggtggtgcgtttccagacaatgcggctcggagagaagtg
gaggctttggcggccgtgtgtcccaacgaaggctgcacgtggacggggactatcaaagaa
tttgaggccagccacgagggtcactgtgacttcatgatcatcctgtgtccttcctgtaaa
gagctgatgagagctaatgaacaggaacgacacaatgagcgagaatgtccagagaggacg
cttaactgcaaatactgcaaagaacccttccttctaaagaacatcaaggctcatgatgaa
atctgtccaaagtacccgatgatttgtgaaggctgcgcaaagaaaaaaatccccagagaa
aaatatgtggaccatattaagttctgcagtaaatttaaagcaccatgcagatttcatgtt
gttggctgcgatacgtctgtggagaaagagaagatccatgaccatgagcggcagtgttcg
tatgaacacctcaacctgctcctgcatttcatcatgggcatcaaagtgagccttgagagc
ctgcagccccagagcctagaggtggccagccataagctgcaggagcttcaccagtccctc
agggacctcgagatgaagatgagccagctgggtgggtgtgctcccgtgcagggtgcatgc
gcccccaccctgaccacctccttcacaccactgcccagcgccatgggcgccgccctagaa
ctgcagctccagagcgaaaagaccaaggtggctgagctgagccggcgctgccaggacctg
gagctcaaagtgagcacattcgagaacatcgtctgtgtcctcaaccgagagatggagcgc
tcctgcaccaccatggaggcctacaaccgccaacacagactggaccaggacaagatcgag
atcctcaacaacaaggttcgtcagctggagaggacagtgagtctgagggacctgtccatc
gtggagatggaagggaaaatgagagagatgtctgcagccacatacgatggcatctttgtc
tggaagatctctgatttcaccaagaagaggcaggacgccgtggctggccgcgcccctgct
atgttctctcccgccttttataccagtaaatacggctacaagatgtgcttgcggatctac
ctgaatggagacggaacgggccgaggcacccacttatctctgttctttgtggtgatgaga
gggcacagcgacgcactcctcaagtggccttttaaccagaaggtcaccctaatgctgctc
gaccagaacaacagggagcacataatcgatgccttccggcccgacatctcctcctcatcc
ttccagaggcctgtcagcgatatgaacatcgccagcggctgcccactcttctgtccgctc
tccaagctggactctaaaaactcctacattcgcgacgacaccatcttcatcaaggccatt
gtagacctcaccgggctctag
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integrated database retrieval system