Scomber japonicus (chub mackerel): 128365862
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Entry
128365862 CDS
T09718
Symbol
cd4-1
Name
(RefSeq) CD4-1 molecule
KO
K06454
T-cell surface glycoprotein CD4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03250
Viral life cycle - HIV-1
sjo03260
Virion - Human immunodeficiency virus
sjo04060
Cytokine-cytokine receptor interaction
sjo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128365862 (cd4-1)
03260 Virion - Human immunodeficiency virus
128365862 (cd4-1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
128365862 (cd4-1)
04514 Cell adhesion molecules
128365862 (cd4-1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sjo04090
]
128365862 (cd4-1)
CD molecules [BR:
sjo04090
]
Proteins
128365862 (cd4-1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
ig
I-set
Ig_2
V-set
Izumo-Ig
C2-set
V-set_CD47
LapA_dom
Motif
Other DBs
NCBI-GeneID:
128365862
NCBI-ProteinID:
XP_053182452
LinkDB
All DBs
Position
10:complement(8311193..8315149)
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AA seq
480 aa
AA seq
DB search
MKNLIQCILIPIAVLMSTTGAEEIEYVEEGGTVTLLRPTTEEKDIYVSWYFGTQSSPPIA
RCNYLGGTEYINGNNDREGIWQGKLTVSTNDLTIKNIQKGNFGIFICKMTVNREDTFITY
KVLKLNASMSPASPLVLGENLKLACDVEATRGQSPKIHWLNPRGEEDDTNSVSRGTITKK
VTNQDNGLWTCVVTNNNKENRAKISVKVMDLNPAPSGPLYTSTSSPLTIPCFFPTHTWDK
IKSKGIKGVHWDFSPKLSSSKESSKVKRLFSLSVENTTWMGDQGRGLSHVPTLKNGNLSL
TRNRAKEGDGGNYTCSVEFSSDITTLSRTISVEVLEIISSPGIELNSGQQLNLSCTTGHA
LLPDMQVKWIPPQSSSVQSLGSDHHPTHLTIPEVGLGDGGKWRCELWRNHTQLTSAMIIL
KIEFKLSVWMVVTICSTAVIVILICILALILHRHRQRKMRFPRQRLCQCKNPKPKGFYRT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacttaattcagtgcatcctcatccccattgctgtgctcatgtcaacaacagga
gctgaggagatagaatatgttgaggaaggaggcacggttacacttctacggccaacaact
gaggaaaaagacatctatgtgtcctggtactttggcacacaaagtagccctccaattgcc
cggtgcaattacctcggtggaaccgagtatattaacgggaacaatgatcgtgagggcata
tggcaaggcaagttgaccgtgtctaccaatgatctgacaattaaaaacatccaaaaagga
aactttgggattttcatctgtaaaatgacggtgaatagagaagacacattcatcacatat
aaagtcctcaaactcaatgcgtccatgtccccagcctctcctctggtgcttggagaaaat
ctgaaactagcctgtgatgtagaggctactcggggtcaaagccccaagatacactggcta
aacccccggggagaagaagatgatacgaacagcgtcagtagaggaacaatcacaaaaaag
gtcacaaaccaagacaatggcttgtggacctgcgtggtgactaacaataataaggaaaac
agggccaaaatttctgttaaagttatggacctcaacccagctccttcaggtcctctgtat
acctctacatcctcgcctctcaccatcccctgtttctttcctactcacacctgggataaa
atcaaaagcaagggcatcaaaggagttcactgggacttctcccctaaactctcatcaagt
aaagagtcaagtaaagtaaaaaggctgttctccctctctgtggaaaatacaacctggatg
ggggaccaaggcagaggactgagtcacgtaccaaccctcaaaaatggaaatctgtctttg
accagaaatcgagcaaaagaaggtgacggaggaaactacacgtgtagcgttgaattcagt
agtgatataacaacgctgagtaggactataagcgttgaggtgcttgaaatcatctcctct
ccaggaatagagttaaattctggccagcagctcaacctgagctgcaccactggccatgcg
ctgcttcccgacatgcaagtgaaatggatcccacctcaatcatcatccgtgcagtctctg
ggatctgaccatcacccaacccatctcaccatcccggaagtgggtttaggcgatggtgga
aagtggaggtgtgagctgtggcggaatcatacacaactgacatcagctatgataatactg
aaaatcgaattcaagctgagtgtgtggatggttgtgaccatatgtagcaccgcagtcatc
gtaatcctcatctgcatccttgccttaatcctccaccgacacagacaacgcaagatgaga
ttccccaggcaacgactctgccagtgcaaaaatcccaaaccaaaaggattttacagaacg
tga
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