Scomber japonicus (chub mackerel): 128369545
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Entry
128369545 CDS
T09718
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like
KO
K20894
shank-associated RH domain-interacting protein
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04217
Necroptosis
sjo04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
128369545
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128369545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128369545
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
128369545
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Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
ubiquitin
CATSPERB_Ig-like
Motif
Other DBs
NCBI-GeneID:
128369545
NCBI-ProteinID:
XP_053186595
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Position
12:19589951..19596767
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AA seq
431 aa
AA seq
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MALSSGGWAPPVSVPASSPQATCGGPAPTACCSTVLMSVRVSVCHSGIRPLCLPGAGSEA
LRLQLSMDPSRAGEFRLALRDTSGNRSVFIAEFDLRSVHYEVKSPRCHEMRLAAPPHDCI
RFNFRCDREAEEWATVVMSSLREAHRVANINSFESDGRQTNMTAAMEQWSSASLPLTEEL
CLELSRAIEAGDTQAASQHASALARQKAVLTIQLSEKNYADGEISLAVVVEDVSSSCCVT
VKVFPYMTVAALKQQVFLEYGFHPRVQRWVIGQCLCTEPRSLASYGIQKDGDTAYLYLIS
ARQARITRQLFQQDLESALLAPPLPPGNGPTSQDWRGYSTLPSRLPHNNQGGGSERPGDI
KDVLDIENLQLNDKPSKANKTQTEWACPSCTFINKPSRPGCEICATARPDSCIQQEKGRR
EDRGEPALSSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggctctcagctcgggcggttgggctcctccagtctcggtccctgcctcgtccccacag
gctacatgcgggggccctgcaccgacggcttgctgcagtactgttttaatgtcagtccgg
gtgtcggtgtgccactccggtatccggcccctgtgtctccccggagcaggcagcgaggct
ctgcgccttcagctcagcatggacccgagccgggccggagagttccgactggcgctgcga
gatacgagcggaaaccgcagtgtgttcatcgcagagttcgacctacgctcggtgcattat
gaggtcaaatcccctcgctgccatgagatgcgtctcgctgctccgccgcacgactgcatc
cgcttcaacttccgctgtgaccgtgaagctgaagaatgggccacagtggtgatgtcatca
ctaagagaagcacatcgagttgcaaatattaactccttcgaatcagatggcagacagacg
aacatgactgcagctatggagcagtggagctcagcctcgctgcctctcactgaggagctc
tgcttggagctttccagggcgattgaagcaggtgacacccaagccgcttcacagcacgca
tccgctctggctcgacaaaaagccgtactgacaattcagctgtctgagaagaactatgct
gatggagagatcagtttagctgtagtagtggaggatgtttcgtcatcttgttgcgtcaca
gtgaaagtctttccctacatgactgtggctgcactcaagcaacaggtgtttctagagtat
ggtttccaccctcgtgtgcagcgctgggtgatcggtcagtgtttgtgcacagaaccgaga
tcactggcgtcctacggcatacagaaggacggggacacagcatacctctacctgatctct
gcccgccaagcccgcattacccgccagctgttccagcaggacctggagagcgcacttctc
gctccgcctcttcccccgggcaacggtcccacctctcaagactggagaggttacagcacc
ctgccctcaagattaccccacaacaaccagggtggaggaagtgagagaccaggtgacatt
aaggatgtcctcgacattgagaatctgcaactgaatgacaaacccagcaaagccaataaa
actcagacagaatgggcttgtccctcatgcactttcatcaacaagccctcccgtccaggc
tgtgaaatctgtgctacagccagaccggacagctgcatccagcaggagaaaggaaggaga
gaggaccgaggagagcccgctttaagcagcagctga
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