Scomber japonicus (chub mackerel): 128375514
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Entry
128375514 CDS
T09718
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128375514 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128375514 (c9orf72)
Membrane trafficking [BR:
sjo04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
128375514 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
DUF7645
Motif
Other DBs
NCBI-GeneID:
128375514
NCBI-ProteinID:
XP_053191859
LinkDB
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Position
16:complement(22046707..22061569)
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AA seq
462 aa
AA seq
DB search
MSSGGPPQSPAVAKSEVAVEGECPLLAATFAYWDNILGPRVRHIWVPKGDQVMFLSDGEV
TFLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSIILPQT
ELAFYLPLHTICVERLKHVIRKGRIWMQKGFNIISVLSLEIVPIMELLASMKTHSVPEDV
DIKDTVLNDDDIGDSCHEDFLHKAISSHLQTCGCSIVVGSNPEKVNKIVRTLCLFLTPAE
RKCSRLCKADSSFKYDTGLFIQGLLKDSTGSFVLPFRQVLYSPYPTTHIDVDINTVKQMP
PCHEHTYNQRRYMRSELSTLWKTDSEEEIPPDTIIHTDETFTPDLNIFQDVMHKDTLVKS
FIDEVFMLKPGLSLRSTYLAQFLLLLHRKALTLLKYIEDDTQKGKKPFRSLRNLKTDLDL
TVEGDLNIVMAFAEKLRAGLHSFVFGKPFYTSMQERDVLMSF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctggcggtccccctcagtcacctgctgtggcaaagtctgaggtagcagtagag
ggagaatgcccgctgctggctgccacctttgcctactgggacaacatcctgggtcctcgt
gtgcgccacatttgggttccaaagggcgatcaggtgatgttcctcagtgatggagaggtg
acatttttggccaatcatacacttaacggggagattctgcgcagtgctgagtgtggtgct
gtggacgtaaagttctttgtcctggcggagaagggtgtcatcatcgtgtctctcatcttc
gatggcgagctgaagggggacaagaacacatgtgccttgtccatcattctgcctcagacg
gagctggccttctacctgcctctgcacactatctgtgtggagaggctgaaacatgttatc
cgcaagggacgcatttggatgcagaagggcttcaacatcatctcagtgctgagtctggag
atcgtccctatcatggagctgttggcctccatgaagacacacagtgtgccagaggatgta
gatataaaagacacggtgctaaatgatgatgacatcggggacagctgccacgaggatttc
ctccacaaggccatcagctctcatctccagacttgcggctgttcaatagtagtcggaagc
aacccggagaaagtaaacaagattgtgcggacactttgcctcttcctcacccctgccgag
aggaaatgctctcgcctctgcaaggctgactcctccttcaaatatgacacgggcctgttt
attcagggtctgctcaaggactccacgggcagcttcgtcctgcccttccgccaggttctc
tactcgccttacccaacaacgcacattgacgtcgacatcaacacggtcaagcagatgccg
ccgtgtcacgaacacacgtacaaccagcgccgctacatgaggtccgagctgagcacgctc
tggaagacggacagcgaagaggagataccgcccgacacaatcattcacaccgatgaaacc
ttcacacctgacctgaatatatttcaagatgtcatgcataaagacactttggtgaagtca
tttatagacgaggtgttcatgctgaagccgggcctgtccctgcggagcacttacctggcc
cagttcctgctgctgctccacaggaaggccctcacgctgctcaaatacatcgaggacgac
acgcaaaaagggaagaagccgtttcggtccttgcgcaacttgaagacggacctggatctg
acggtggaaggagacctgaacattgtaatggccttcgccgagaagctgagggcaggtctg
cactcgtttgtgttcgggaagccattctacaccagcatgcaggagcgagatgtgctcatg
agcttttga
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integrated database retrieval system
