Scomber japonicus (chub mackerel): 128376979 Help Entry 128376979         CDS       T09718                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04115   p53 signaling pathway sjo04145   Phagosome sjo04148   Efferocytosis sjo04350   TGF-beta signaling pathway sjo04510   Focal adhesion sjo04512   ECM-receptor interaction sjo04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sjo00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     128376979 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128376979 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     128376979 (thbs1b)    04148 Efferocytosis     128376979 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     128376979 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     128376979 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     128376979 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sjo04131]     128376979 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sjo00536]     128376979 (thbs1b) Membrane trafficking [BR:sjo04131]  Endocytosis   Phagocytosis    Opsonins     128376979 (thbs1b) Glycosaminoglycan binding proteins [BR:sjo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128376979 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 EGF TSP1_ADAMTS cEGF Laminin_G_3 TSP1_CCN Motif Other DBs NCBI-GeneID:  128376979 NCBI-ProteinID:  XP_053192825 LinkDB All DBs Position 17:complement(22613266..22625627) Genome browser AA seq 1169 aa AA seqDB search MKLTGIFLLLMLWSCESARVAESRDDNSVYDLFELVQVPKKNHGVSLVKGDDPYSPAYKI LNPDLIPPVPERAFRDLIDSIHAEKGFLLLLNFKQFKRTRGSLLTVEKKDGSGPVFEIVS NGKANTLDIVFSTENKQLVVSIEDVDLATSHWKNITLFVQEDRAVLYTGCEEVDTAELDA PIQSILTQETPATAQLRVGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSMTADTM ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVTMFKELKGLGVVVKELSNELRQLTD ENKLIKHHIGIHSGACIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGSWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQLGGKECEGEGRQT EKCQKSSCPINGNWGPWSPWDTCSLTCGGGSQTRKRLCNDPAPKYGGKDCIGDVKDTQTC NKKACPIDGCLSNPCFAGAKCISAPDGSWKCGKCPVGYTGNGIKCKDIDECKEVPDACFE FNGVHRCENTEPGYNCLPCPARYSGPQPFGKGLEQAAAKKQVCTPRNPCLDGSHDCNKNA RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGIGDACDSDDDNDSIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISQTDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSLYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagctgacagggatatttttgctattgatgctttggagctgcgagagtgcgagagtc gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcgtccaagtccccaag aagaaccacggcgtctccctggtgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccggacctgatccccccagtccccgagagggccttcagggacctgatcgattcc atccatgccgagaagggattccttctcctgcttaacttcaagcagttcaaacgcaccagg ggaagcctcctgaccgtggagaagaaggatggctccggtccagtgtttgagatcgtctcc aacggaaaggcgaacactttggacatagttttctccaccgagaacaagcagctggtggtt tccattgaagatgtggatctggctacgagccactggaagaatatcacgttgttcgtgcag gaggaccgggcggtgctgtacacgggatgcgaggaggtggacaccgcagagctggatgcg cccatccagagcatcctgacgcaagagacccctgccaccgcgcagctcagggttgggaag ggagccgtgaaggacagatttatgggggtcctgcaaaatgtgcggtttgtgtttggaaca acgctggatgccatcctccgcaacaaaggatgccaaagctcaatgacagctgacaccatg atcctggagaacctcaatggctcctcagccatcagaacagagtataccggacataagact aaagacctgcagatggtctgtggcttctcctgcgaggacctggtcaccatgtttaaggag ctgaagggtctcggtgtggtggtcaaggagctgtccaatgaactccgccagctgactgat gaaaacaagctgattaagcaccacatcggtattcatagtggcgcctgcattcacaatggc attgtgcacaaaaacagagatgagtggactgttgatgactgcaccgagtgcacttgtcag aactctgctactgtgtgccgcaagatctcttgccccctgatcccctgtgctaatgctacc gttcctgatggagaatgctgcccgcgctgtggaacaccgagcgactatgcagaggacggc tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag cgtgggcgctcttgcgaccgtatcaataacaactgtgagggtacctctgtgcagacccgc gactgctacctccaggagtgtgacaagcgcttcaagcaggatggcagctggagccattgg tcaccctggtcatcatgctctgtcacctgtggtgagggtgtcatcacccgtatccgcctt tgcaactccccaacccctcagcttgggggcaaagagtgtgaaggagagggccgacaaacc gagaagtgtcagaagtcttcgtgccccatcaatggcaactggggaccctggtcaccgtgg gatacctgctctcttacatgtggaggcggttcccagactcgtaaacgattgtgcaatgac ccagcaccaaaatacggtggcaaagattgcattggtgacgtcaaagatactcagacgtgc aacaagaaagcctgtcccattgatgggtgcctatccaacccctgctttgctggggccaag tgcatcagtgcccctgatggttcctggaagtgtggaaagtgcccagttggctacaccggc aacggtatcaagtgtaaagatattgatgagtgcaaggaggtcccagatgcttgctttgag tttaatggtgtgcaccgctgtgagaacacagagcctggctacaactgcctcccatgtcct gctcgctactctggaccccagccgtttggcaaaggattggagcaggctgctgctaagaaa caggtatgcacaccccgtaatccctgcctcgacggaagccacgactgcaacaaaaacgcc cgctgtaactacctcggacactttgctgatcccatgtaccgttgtgagtgcaaacctggt tatgctggcaatggccatatctgtggagaggacacagatctggatggatggcccaacgca gacttggtttgtgtggagaatgccacctatcactgcaaaaaggacaattgccccaacctg cctaactctgggcaggaagactatgataaggacggcattggagatgcttgtgacagtgat gatgacaatgatagcattcctgatgatagggacaactgtccattcgtctacaaccccagg cagtacgattatgaccgtgatgatgtgggtgaccgctgtgacaactgcccctataacagt aacccagaccagacagacacagacaacaatggagagggagatgcctgtgctgtggacatc gatggagatggcatactaaatgagaaggacaactgtccctatgtgtataatgtcgaccag aaagacacagatctagatggggtgggagacatgtgcgataactgccctctggaacataat cctgatcaggtggattcagatgatgaccgtgtgggagacaagtgtgacagcaatcaggat attgatgaggacggacaccagaacaatctggacaactgcccatacatccctaacgccaac caggctgaccatgacaaagatggcaagggagacgcctgcgaccatgatgatgataatgat ggcatccccgatgaaaaggacaactgcagactggcctttaaccctgaccagctggactct gatggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaatgtgcctgac atctatgacgtgtgtccagagaactttgatattagtcagacagacttccgcaagttccag atggttcctctggatcccaaaggcacctcccagattgatcctaactgggttgtccgccat cagggcaaagaattggttcagactgtcaactgcgaccctggtattgctgttggctaccat gagttcaattcagtggacttcagtgggactttcttcatcaataccgagagggatgatgat tatgccggcttcgtgtttggttaccagtctagttccaggttctatgtggtgatgtggaag cagatcacacagacatactggtcaaataaacccaccaaagcccagggctactctggtctg tccatcaaagtggtcaactccactactggcccaggagagcacctcaggaatgccctctgg cacacaggaaatacaccaggacaggtccgcactctctggcatgaccctaagaatgttgga tggaaagatttcactgcctacagatggcatctgatccacagaccaagaacaggacatatt agagttgtgatgtacgaaggcaagaagatcatggcagattctggtagcctctatgacaag acatatgcaggcggcaggctaggtctttttgtcttctcacaggagatggtatacttctca gacctgaagtatgaatgcagagatgcataa

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