Scomber japonicus (chub mackerel): 128380480
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Entry
128380480 CDS
T09718
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04010
MAPK signaling pathway
sjo04137
Mitophagy - animal
sjo04141
Protein processing in endoplasmic reticulum
sjo04210
Apoptosis
sjo04217
Necroptosis
sjo04621
NOD-like receptor signaling pathway
sjo04622
RIG-I-like receptor signaling pathway
sjo04920
Adipocytokine signaling pathway
sjo05132
Salmonella infection
sjo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128380480 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128380480 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128380480 (traf2b)
09143 Cell growth and death
04210 Apoptosis
128380480 (traf2b)
04217 Necroptosis
128380480 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128380480 (traf2b)
04622 RIG-I-like receptor signaling pathway
128380480 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
128380480 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128380480 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
128380480 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128380480 (traf2b)
04121 Ubiquitin system [BR:
sjo04121
]
128380480 (traf2b)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128380480 (traf2b)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128380480 (traf2b)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
128380480 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_6
zf-RING_UBOX
TRAFD1-XIAF1_ZnF
ATG16
Paramyxo_NS_C
Sina_ZnF
zf-C3HC4_5
MscS_porin
Motif
Other DBs
NCBI-GeneID:
128380480
NCBI-ProteinID:
XP_053196279
LinkDB
All DBs
Position
19:17781631..17793745
Genome browser
AA seq
522 aa
AA seq
DB search
MARISLDCIDSLPGFPLSVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKQLTSS
GPKPCEACRQEEIYEEPMSILNSSEAFPDNAAGREIASLPARCLNQGCSWTGSIKEYEAQ
HERHCEFERIQCEACQMLILRTEKDRHDERECEARTLNCKYCKVTFNFKDIKAHDEVCVK
FPLQCKDCGKKKIPREKFNDHSKSCAKSKSACPFSEVGCKSVIENGKISDHEHSSTMEHL
RLLLPMVLSLTKTSTDASGPGEWQEDSGLGLYRAPEEGAAMGVGAGAAASAQSVDLEKKV
NALENIVCVLNREVERSSVTLEAFSHQHRLDQEKIENLSNKVRQLERTLTMRDLQLSETE
QMVQELQFCTYDGIFVWKISDFSRRRQEAVAGRSPAMFSPAFYSSKYGYKMCLRLYLNGD
GTGRGTHLSLFFVVMQGKSDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVTSTSFQRP
ISEMNIASGCPLFCPLAKLAGKSAYLKDDTIFIKAIVDLTGL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaatctcgttggactgcatcgactcgttaccagggttccccctcagtgtcctg
tcagtgcccatggagaataagtacaaatgtcagcagtgtctccaggtcctgaggaagcct
gtccaggctcagtgcggacaccgcttctgtgtacactgcttcaagcagctcaccagttct
ggcccaaagccatgtgaagcctgccgccaagaagaaatatatgaggagcctatgtccatt
cttaatagtagtgaggcatttccagacaatgcagcagggcgagaaatagcaagtctgcct
gctaggtgtttgaaccagggttgcagttggacaggatcaataaaagagtatgaggctcag
catgaacgtcattgtgaatttgagcggatacagtgcgaggcctgtcaaatgttaatcctt
cgtacagagaaggacagacatgatgagagagaatgtgaagcaaggacactcaattgcaaa
tactgcaaagtgaccttcaactttaaagacatcaaggcccatgacgaggtatgcgtgaaa
tttcccttgcaatgtaaagactgtggaaagaagaagatcccaagagaaaagttcaatgac
cacagcaagtcctgtgccaagtccaagagtgcctgtccattcagtgaagtgggctgtaaa
tcagtgatagagaacgggaagatcagcgatcatgagcacagcagcaccatggagcacttg
cgtctgctgctgcccatggtgctgtcgctaactaagacaagtacagatgcttcaggtcct
ggtgagtggcaggaagactctggtctgggcctgtacagggctcctgaggagggagctgct
atgggtgtgggtgcgggagctgcagcctctgcgcagtccgtggacttggagaaaaaggtg
aatgctttagaaaacattgtttgtgtcttgaaccgggaagtggagcgcagttcagttaca
ttggaagccttctcccatcaacatcgtttagaccaagaaaagattgagaatctgtccaat
aaagtgcgtcagctagagaggacgctgacgatgagagatttgcagctgtctgagacggaa
cagatggtgcaagaacttcagttctgcacttatgatgggatatttgtctggaaaatctct
gacttctcacgccgaagacaagaggctgtggctggtcgatcacctgcaatgttctcacca
gcgttttactccagcaaatacggctacaaaatgtgtctgaggctgtatttgaacggcgat
gggacgggtagaggaacccatctttccctgttctttgtcgtcatgcagggcaagtctgac
gctctgctcaaatggcctttcagccagaaggtgacgctcatgctcctggatcagaacaac
agggagcacattatcgatgctttccgcccggatgtcacctccacctcctttcagaggccg
atcagtgagatgaacatcgccagtggctgcccactcttctgtccattggcaaaactcgct
ggcaagagcgcctatttgaaagatgacacaattttcataaaagccattgtagacctcaca
ggcttgtaa
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