Scomber japonicus (chub mackerel): 128380737
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Entry
128380737 CDS
T09718
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04010
MAPK signaling pathway
sjo04137
Mitophagy - animal
sjo04141
Protein processing in endoplasmic reticulum
sjo04210
Apoptosis
sjo04217
Necroptosis
sjo04621
NOD-like receptor signaling pathway
sjo04622
RIG-I-like receptor signaling pathway
sjo04920
Adipocytokine signaling pathway
sjo05132
Salmonella infection
sjo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128380737
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128380737
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128380737
09143 Cell growth and death
04210 Apoptosis
128380737
04217 Necroptosis
128380737
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128380737
04622 RIG-I-like receptor signaling pathway
128380737
09152 Endocrine system
04920 Adipocytokine signaling pathway
128380737
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128380737
09171 Infectious disease: bacterial
05132 Salmonella infection
128380737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128380737
04121 Ubiquitin system [BR:
sjo04121
]
128380737
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128380737
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128380737
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
128380737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
SlyX
zf-C3HC4_2
ATG16
zf-C3HC4_4
zf-RING_6
Dynamitin
Motif
Other DBs
NCBI-GeneID:
128380737
NCBI-ProteinID:
XP_053196594
LinkDB
All DBs
Position
19:complement(24904306..24920883)
Genome browser
AA seq
595 aa
AA seq
DB search
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCNACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINESCTWKGSIKE
YELNHEGKCEFMIIPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERAFA
YEHLNLLLHYIMGMKVSMEGLQPQGLELAGHKLVELQQSLRELEARVSQLSTTSSGPPVQ
GAAASSSSSSGPPGPTTSAPLPPPPTLAPTLTVSTSFTPLPSSVGAALELQLHSEKTKVA
ELGRRCTELEVKAGTFENVVCVLNREVERFATTMEASNRQHKLDQDKIEALSNKVRQLER
TVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFYTSKY
GYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREHIIDA
FRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggccacacaggaaccgtcccctccctcgtccatggagagcaataaacccggcttcccc
aagaagatcctgggcaataagctggaggacaaacacctgtgcaactgctgtcacaatata
ctgagacgaccgtttcaagcccagtgtggacatcgcttctgttcctactgcttcaacagg
actgtgagtaatggaccccagaaatgcaacgcttgcattaaagaggatatttttgaggac
cccacgtcgattttgaaacaaggatgtgcttttcctgacaatgcagttcgaagggaagtt
gaaaacctctcagctgtttgtatcaatgaaagttgcacttggaaaggcagcattaaagag
tatgagctgaaccacgaggggaagtgcgagttcatgatcatcccctgcccctcctgtaaa
gaacgaattcgcttcaatgaacaggagcgccataatgagcgcgagtgccctgagcgtaca
ctcaactgcaagtactgcaaggagccatttcacttcaaaaatatcaaggcacatgatgag
atctgtcccaagtacccgatgatctgtgaaggctgtgccaagaagaaaatacccagagaa
aagtatgtggaccatattaaattctgcagcaaattcagaactccgtgtcggtttcatgtc
gtgggatgtgatatgtctgtggagaaggaaaagattcatgaccacgagcgcgcctttgcc
tacgagcacctcaacctgctgctgcactacatcatgggcatgaaagtgagcatggagggc
ctgcagccccagggactggaactagctgggcacaaactggtggagctccagcagtccctc
cgagagctcgaggccagagtctcccagctcagcaccacctcctctgggcctcccgtgcag
ggagcggccgcctcctcatcttccagctccggtccccctggtcctaccacatcagctcct
ctcccaccacctcccactctggctcccactctcaccgtttctacctcctttacacctctg
cccagctcagtgggtgcggcgttggagctccagctccacagcgagaagacgaaggtggcc
gagttgggccgcaggtgcacagaacttgaagttaaagccggcacgtttgaaaatgtggtg
tgtgtcctgaacagagaggtggagaggtttgccaccaccatggaggccagtaaccgtcag
cacaaactggaccaggataagatcgaggctctgagtaataaggtgcgacagctggagagg
acggtggggctaaaggacctgacagttgctgagatggagggccggctgagagaaatgtct
gccacaaccttcgacggcgtctttgtctggaggatttctgactttgctaaaaagagacag
gatgccatcgcaggtcgagcccctgccatgttctcaccagctttctacacgagtaagtac
ggctacaagatgtgtctgcggatctatctgaatggagatgggacggggcgtggcagccac
ttgtccttgttctttgtggtgatgaggggactaagtgacgctctactcaaatggcccttc
aaccagaaggtgactctgatgctgctggaccagagcaacagggagcacatcatcgacgcc
tttcgtcccgatgtcacttcctcctccttccagagacccgtgagcgagatgaacatcgct
agcggctgtcctctcttctgcccgctctccaagctcgacgccaagaactcttacatccgt
gacgacaccatcttcatcaaggcgatcgtggacctcaccggcctctag
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