Scomber japonicus (chub mackerel): 128381022
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Entry
128381022 CDS
T09718
Symbol
rfng
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo00514
Other types of O-glycan biosynthesis
sjo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
128381022 (rfng)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
128381022 (rfng)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sjo01003
]
128381022 (rfng)
Enzymes [BR:
sjo01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
128381022 (rfng)
Glycosyltransferases [BR:
sjo01003
]
Glycan extension
O-Glycan
128381022 (rfng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Motif
Other DBs
NCBI-GeneID:
128381022
NCBI-ProteinID:
XP_053196933
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All DBs
Position
20:complement(26678703..26695372)
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AA seq
414 aa
AA seq
DB search
MNLLHRPVRMHIASVGVSKFCFLFSLVFCGLLLLLIPALQPQARHADLPHPRPWVRPAQV
GKASTYTLQQSGVPAMSSHDRDTDWTTGLNRSSVLQEETDMNINDNHNDKKGTGSKRNPE
RGAPRGGKVGRLSGSRSRDVLELKDIFIAVKTTRKYHKSRLELLIQTWVSKAKEQTYIFS
DGEDKELRMKTGANIINTNCSAAHTRQALCCKMSVEYDKFIESQKKWFCHVDDDNYVILP
SLLRLLSSYHHSQDVYLGRPSLDHPIEAAERVKSDGSVSVKFWFATGGAGFCISRGLALK
MSPWASLGNFISTAEKIRLPDDCTIGYIIEALLEVTLTHTHLFHSHLENLQKLPTDTVLE
QVTLSYGGFENRRNVVSIVRGFSLAEDPTRFKTVHCLLYPDTDWCPKLKPRHKN
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgctccatcggcccgtcaggatgcacatagcttcagtgggtgtcagtaagttc
tgcttcctgttttccctcgtcttctgtggcctcctgctcctgctgatccctgcactccag
cctcaagctcgccatgcggacctgcctcacccccgaccctgggtcagacctgcacaggtg
ggcaaggcctcgacctataccttacagcaaagtggggtccctgcaatgtccagccatgac
agggacacggactggaccacgggactgaacaggagctcagtgttgcaggaggagactgat
atgaacataaatgataaccacaatgacaagaaaggcacaggctccaaaagaaacccagaa
agaggggctccacgtggagggaaggttggcaggctttcaggctccaggtcacgggacgtt
ttagagttaaaggacatttttattgcagtgaagaccaccaggaagtaccacaagtccaga
ctggagctgctgattcagacctgggtttccaaagctaaagaacagacctacatattctct
gatggtgaagacaaagagttgcggatgaaaacaggagctaacatcatcaacactaactgc
tcagcagctcacacccgccaggctctgtgctgcaagatgtctgtagagtacgacaaattc
atcgagtctcagaaaaagtggttctgccatgtggatgatgataactatgtgatcctgccc
agtcttctgcggctgctctcctcctaccaccacagccaggacgtttacctgggtcgaccc
agtctggatcatcccatagaggctgcagagagggtgaagagtgacggatcggtgtcggtc
aagttctggtttgctacaggcggagcaggtttctgtatcagcagaggtctggctctgaag
atgagcccatgggccagtttggggaatttcatcagcacagcagagaagatccgactccca
gacgactgcaccatcggctacatcatcgaggcgctgttggaggtcactttaacacacaca
cacctcttccactcccacctggagaatctacagaagctgcccaccgacactgtgctggag
caggtgactctcagctacggaggctttgagaacagaaggaatgtggtcagcattgttaga
ggcttttcactggctgaagacccaacaaggtttaagacagtccactgccttctgtatcca
gatactgactggtgtccaaagctcaaacctcgccacaaaaactga
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