Scomber japonicus (chub mackerel): 128381104
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Entry
128381104 CDS
T09718
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03440
Homologous recombination
sjo03460
Fanconi anemia pathway
sjo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128381104
09124 Replication and repair
03440 Homologous recombination
128381104
03460 Fanconi anemia pathway
128381104
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sjo01009
]
128381104
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128381104
03036 Chromosome and associated proteins [BR:
sjo03036
]
128381104
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128381104
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128381104
Protein phosphatases and associated proteins [BR:
sjo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128381104
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128381104
Multi subunit type E3
BRCC complex
128381104
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128381104
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128381104
BRCA1-A complex
128381104
BRCA1-B complex
128381104
BRCA1-C complex
128381104
BRCA complex
128381104
FA (Fanconi anemia) pathway
Downstream FA components
128381104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
RING_XB3-XBAT31
zf-RING_5
zf-Nse
zf-MIZ
zf-RING_4
zf-ANAPC11
zf-RING_6
PTCB-BRCT
TRAF3_RING
zf-RING_10
Rad50_zn_hook
Sina_RING
zf-PARP
DUF5847
Motif
Other DBs
NCBI-GeneID:
128381104
NCBI-ProteinID:
XP_053197031
LinkDB
All DBs
Position
20:complement(13720264..13743692)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKTPNATEVKRGIAVLWETLQCPICLDLMTAPVSTKCDHQFCNFCMLKLLDNTKQNKASC
PVCKAKITKRSLRESPGFQRLVAGLQDMIQAYEHDTGTNYFTGMSQQKIQPGVTDAEANK
QTCNGSSGDTPGTDPDNVESANNDDLPMSHSSTVAAQNGFARLMGLEDTSPLTTENEGLD
SGLGGALLIPENKTPSPTDYAEPLETETSEVVEKATLTHRTRGKMRNAKLEESSLLLIPD
ETENQPRRRSLRKKQKVDLEPETILEQRQKRSVEKVAEWLMKVPTEESLELEKPAEDTCD
PDDSDSASSTSTINVKLHYSDMNPKREDRAKALEEQVFGAVYKRGRRGNRTTSPPLNSSS
EDKYESDMEEEQEMTGQINDTCSEIFKEAEEIVTEENNKKETRDKYEEELNNIPERDDDN
NGKDEVPCLVSDIEPPQPGRKLKKRMRDTRQHVDSDLQEQAKPNMESSEQKKTDKRKGKN
TKSEKSKSGRVVKPLVLVGVQNGETSPITRQVEEEIQVHIENYPSSDDHETPIMRSTRRS
RRLQLFAEEVQEGPKKARAPKNLRKSIHDKDSSDAEQSEDAKGAISCNSASPKNGNLING
CIYDQDIGGIENMEFGERTSSLRPTGDVTSVKESIVLSEAVEDPALDSDNPTDECPNNIQ
SQTVACKTKCAIKEIEEDKNDSELDTEQLLKSFKSTKRKSFHLGGPDVKRSRGLGDENVH
EERSDSGSGVKGAKQLRNPDVTNSPVLKDNDNSSCSDWIPPSNSSILTRNRVSKKGDQLV
EEVLIPETSSSIQCSAGNFGNSVSSALSPNKVSKHETEIPHFSVVPQVVDSGLCFRAVEL
SEGGEREELNEPTKCSQITDNELSCTGRDAEKVKEMRDNISLENSAVSGKQSPDNAAEGF
LNAESSLTPDGLGIPVVQVSPEIQTSSHGSEELSIHSSVKSKLRKKKKKKAQRLESSPES
DCSGAKEELPTLTQIFGTSAPPSAVCLDDQDQADSRCEDACVTADEAEQLSRPPMCPSPD
CVNSSQASVDLFGTPDECDVPVNDSNVVESSQFSSDVLVTQQKIEMQKELFRLEKLMALV
SEVLQEKEDSPNSKVPSETHPSSKTTGPDVHRPLPCDQGARQSSDRNDVPDAGREPDSRL
CDGKGVSKHGGIAEMAVQRSTHTGPSVKATGASKTPSSSSAAKTVVSPADGQENKENNTP
ERDRSKAKMVLVSSGLEPTEQIMVKKFAKRIGARVVSRVTPEVTHIIMSTDERLVCERTL
KYFLGIAGRKWVVSFQWIAECFKQKKLLDETIFEVRGDVVNGPDHQGPTRARTTDDNNLL
MKDYQICFQGPFTDMTTDELEWMVELCGAVVVTDPLLLDGKQKSHQLVIVQPGSESRPST
YSSLSRQATVVTRGWLLDTVATYTLQTYSNYTT
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccccaaatgccacagaagtcaaaagggggattgcagtcctttgggagactctg
cagtgccccatatgtctagatttaatgactgcacctgtatccacaaagtgtgaccatcag
ttttgcaacttttgtatgttgaagcttttggacaacaccaaacaaaacaaagccagctgt
ccagtgtgtaaagccaagataacaaaaaggagtttgcgtgagagcccagggtttcagaga
cttgtagcaggattgcaagacatgatacaggcctatgagcacgacactggcacaaactac
tttactggaatgtcccaacaaaaaatacaaccaggtgtcacagatgctgaagctaataaa
caaacatgcaatggttcatccggagacacacctggtactgaccctgacaacgttgaaagt
gcaaacaatgatgatcttccaatgtcccactcttcaactgtagcagcccagaatggattt
gcaaggctgatgggacttgaagacacaagtcccttgacgacagaaaatgaaggtctggat
agtggcctcggtggggcccttctaattccagaaaataaaacacccagccccaccgattac
gcagaaccactagaaacagaaacatcagaagttgttgaaaaggcaaccttaacacacaga
actagaggcaaaatgagaaatgccaaattggaggaatcctcgcttcttctaattccagat
gagacagaaaaccaacctagaagacggtccttaaggaagaagcagaaagttgatttggaa
cctgaaacaattttagagcagagacagaaaagaagtgttgagaaagtcgctgagtggctc
atgaaagttccaactgaggaaagtctggagttagagaaacctgctgaagacacctgtgac
ccagacgactctgacagcgcttcttccacttcaacgataaatgtcaagctacactatagt
gacatgaatccaaagagagaggatcgtgctaaagcgcttgaagagcaggtgttcggggct
gtctacaaaagaggccgaagagggaacagaaccacctctcctccactaaattccagctct
gaagataaatatgaaagtgacatggaggaagagcaagaaatgacagggcaaataaatgat
acctgcagtgaaatttttaaagaagcagaagagatcgtcacagaggaaaataataaaaag
gaaaccagagacaaatatgaggaagaattgaacaacattccagaaagagatgatgacaat
aatggcaaagatgaggttccctgtcttgtgtctgatattgaaccacctcaaccaggcaga
aagttgaagaaaaggatgcgtgatactcgtcagcacgttgacagtgatttgcaagagcaa
gctaagccaaacatggaaagttctgaacaaaagaaaactgacaagaggaaaggtaaaaac
acaaagtcagaaaaaagcaagtctggcagagtggtgaagccccttgttctggttggagtt
cagaatggagagaccagtcctataactagacaagtagaagaagaaatccaagttcatatt
gagaattaccctagcagtgacgaccacgaaacccccattatgaggagcaccaggagaagc
agaaggcttcaactctttgccgaggaagtccaggaaggtcccaagaaagcacgcgctcca
aaaaacttgagaaagagtatacatgacaaagacagcagtgatgcagagcaatctgaggat
gctaaaggtgctatatcgtgtaattcggcctcacctaaaaatggaaacttaataaatgga
tgcatttatgatcaagatatcggaggaattgaaaacatggagtttggtgaaagaacgtct
tctctgaggccaacgggagatgttacatctgtcaaagagtccattgttctgtccgaggct
gtagaagatccagcacttgatagtgataatccaactgatgaatgcccaaataacattcag
tcgcagactgtagcttgcaagactaaatgtgccataaaagaaattgaggaggataagaat
gacagcgagctggacacagagcaactgctcaagagcttcaaatccacaaaaaggaaatct
ttccatcttggaggtccagatgtgaaaaggagcagaggtttaggtgacgaaaatgtgcat
gaggagagaagtgatagtggttctggagtcaaaggggcaaaacagctgagaaaccctgac
gtaactaattcacctgtgttaaaagacaatgacaactcatcttgtagtgattggatcccc
ccatctaactcgtccatcctgacaagaaatagagtctccaaaaaaggagatcaattggtt
gaagaagtcctgatccctgaaacgagtagctctattcagtgcagtgctggaaacttcggg
aacagtgtcagtagtgccctcagccctaataaagtgtcaaagcatgaaacagagattcct
catttttctgttgtacctcaggtagtagattccgggctctgcttcagagctgttgagttg
tctgaaggtggtgaacgtgaggagctaaatgaaccgacgaagtgttctcaaatcacagac
aatgagcttagttgtactggaagggatgctgagaaagtgaaggagatgagagacaacatt
tcactggaaaattcagctgtctctggaaaacagagtccagacaatgcagcagagggtttc
ctaaatgcagaatcatctttaactcccgacggccttggaataccagttgtccaagtgagc
cccgaaatacagacgagtagccatggaagtgaagagctcagcatccattcatccgtcaag
agcaaactgagaaagaagaagaagaagaaggctcagaggctcgagtcttctcccgagtct
gattgcagcggagccaaagaagaattaccaactttgacccaaatttttggaacatcagct
cctccctccgcagtgtgcctggatgaccaggatcaggcagactccagatgtgaagatgca
tgtgttacagctgatgaagcagaacagctgagccgtccacctatgtgcccgagccccgac
tgtgttaattccagccaagcgtctgtggacttgtttggcacaccagatgaatgtgatgtt
ccagtaaatgactccaatgttgttgagtcatcacaattctcaagcgatgtccttgtcact
cagcaaaagatagaaatgcagaaggagctgtttaggctggagaaattgatggctctggtg
tcagaggtgcttcaggagaaagaggacagccccaacagcaaagtcccctcagaaacacac
ccgagctccaagaccacaggcccagatgtgcacagacccctcccatgtgaccagggtgca
aggcaaagttcagacaggaatgatgttcctgatgcaggacgagagcctgattcacgacta
tgtgatggtaaaggtgtgtcaaagcatggcggcattgcagagatggccgtgcagcgctcc
acgcacacagggccgagtgtaaaagccaccggagcctccaaaacacctagttcaagctca
gcagccaaaacagtagtttcaccagcagatgggcaagagaacaaagaaaacaacactcct
gagagagacaggagtaaagctaaaatggtgctagtgtcatctggattagagcccactgaa
cagataatggtgaaaaagtttgccaagcgtatcggtgcccgtgtggtttcccgggtgacg
ccagaggtcacgcatatcataatgtccacagatgaacgactggtgtgtgagcgcacgctg
aagtacttccttggcattgcaggcaggaagtgggtagtgagcttccagtggattgctgag
tgcttcaaacaaaagaaactcttagatgagactatctttgaagttagaggtgatgtggtg
aatgggcccgaccaccagggccccacgagagctcgcactactgacgataacaatctgctc
atgaaggactaccaaatctgcttccaaggaccttttacagacatgactacagatgaactg
gagtggatggtggagttatgtggagcagttgttgtgacagatccacttctgcttgacggt
aaacagaagtcccatcagctggttattgtgcaacctggatcagagtcgcggccgtccaca
tacagcagtctctctagacaggctacagttgtgactcgtggttggctgttggatacagtg
gcaacttacaccctccaaacctatagcaactatacaacatga
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integrated database retrieval system
