Scomber japonicus (chub mackerel): 128382417 Help Entry 128382417         CDS       T09718                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04010   MAPK signaling pathway sjo04120   Ubiquitin mediated proteolysis sjo04140   Autophagy - animal sjo04144   Endocytosis sjo04620   Toll-like receptor signaling pathway sjo04621   NOD-like receptor signaling pathway sjo04622   RIG-I-like receptor signaling pathway sjo05132   Salmonella infection sjo05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:sjo00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     128382417 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     128382417 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     128382417 (traf6)    04140 Autophagy - animal     128382417 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     128382417 (traf6)    04621 NOD-like receptor signaling pathway     128382417 (traf6)    04622 RIG-I-like receptor signaling pathway     128382417 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     128382417 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     128382417 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sjo04131]     128382417 (traf6)    04121 Ubiquitin system [BR:sjo04121]     128382417 (traf6) Enzymes [BR:sjo01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      128382417 (traf6) Membrane trafficking [BR:sjo04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     128382417 (traf6) Ubiquitin system [BR:sjo04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     128382417 (traf6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 TRAF6_Z2 zf-RING_5 RING_XB3-XBAT31 U-box TRAF3_RING zf-RING_11 Sina_ZnF zf-TRAF_2 Prok-RING_4 zf-rbx1 DM DUF7310 Motif Other DBs NCBI-GeneID:  128382417 NCBI-ProteinID:  XP_053198415 LinkDB All DBs Position 1:complement(32705931..32711423) Genome browser AA seq 570 aa AA seqDB search MACFDSSKGSLEEDSYEGGELSNCAMAMMNAEKEQESMLSPSESPGTFISSNSSSLQAAV PLQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDTGQKCPVDNEM LSEDQLFPDNFAKREILSLTVRCPNAGCADRMELRHLEKHVVQCQFATVPCPLCQKSVRK IYLEEHTTDECLRRPVSCSDCVACFVFEERELHELQCPFANVKCQYCEMDLIRDQIGPHC DTDCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLW ALAPSVSSEDPGAAASVSASGGSRGTVSCNSNFAPSQPSEEMQRLREMDGRLVKQDHQLR ELIILKDTRSGQLAELQRRVSMLEDTVKELEAQQCHGIFIWRLKNFSSHLRNQEAGQPVV EHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGSYDGLLTWPFQGTIRLAI LDQGPDGQHHMELMETKPDLQAFQKPTIQRNPKGFGYVTFLHLTQLNQRSFVKDDTLLIR CEVSPRFDNVFHREGPTVQPRGPEASVSRD NT seq 1713 nt NT seq  +upstreamnt  +downstreamnt atggcttgctttgatagtagtaaggggagtttggaggaggacagttatgaaggtggagag ctgtccaactgtgccatggcaatgatgaatgctgaaaaggaacaagaatcaatgctcagc ccctcagagagccctggcaccttcatcagcagcaactccagcagtcttcaggctgccgtc ccccttcagggctacgatgtggagttcgacccacctctagagagtaaatatgagtgccct atctgcctcatggctttgaggaatgccatccaaacaccctgtggtcaccgtttctgcaag aactgcattgagaagtccattcgtgacacaggacagaagtgccctgtggacaatgaaatg ctgtcagaagaccagctgtttcctgataactttgccaaacgggagattctttcattaact gttcgctgtccaaatgctggctgtgctgatagaatggaactccgacatttagagaaacat gtggtgcagtgtcagtttgcaactgtgccttgcccactgtgccaaaagtctgtgagaaaa atctacctagaggagcacacaacggatgagtgcctaaggagacctgtgtcgtgttcagac tgtgtggcatgctttgtatttgaggagagagagcttcatgagctgcagtgtccctttgcc aatgtcaagtgccagtactgtgagatggacctcatcagagaccagattgggcctcattgt gatacagattgcccaaaagcaccaattgcctgtaactttagcacctttggatgtaaggaa aggatgcagcgccacaacttggctcagcacatgcaggagttcacacagatgcatatgcgc tacatggcggagttcctgcgtggccttagccttaatggcaccaccccaaaatcactctgg gcacttgcaccatctgtttcctctgaggatccaggagctgcagcatcagtatccgcctct ggtggttccagaggaactgtaagctgcaacagcaactttgccccttctcagcctagtgaa gagatgcaaaggctccgggagatggatggacgactggtgaaacaggatcaccagctacgt gagctcatcatcttaaaagatacacggtcgggccagcttgcagagctccagcgtagggtg tctatgctggaggacacggtgaaggagctggaggctcagcagtgccacggtatcttcatc tggcgcctcaaaaatttctcttcccacctgcggaaccaagaagcaggacagccagtagtt gagcacagcccaggcttctacactggtcgcccaggctataaactgtgcctgcgcttacac ctgcagacccccaacgccccacgctgctccaacttcatctccttatttgtccacaccatg caaggatcttatgatgggctgctaacctggccgttccagggcaccatccgactcgccatc ctagaccagggccctgatggtcagcaccacatggagctgatggagactaagccagacctg caagccttccagaagcccaccatccagcgcaaccctaaaggatttggctacgtgaccttt ctgcacctgacacagctgaatcagagatcctttgttaaagacgacactcttcttatccgc tgtgaagtctcgccacgcttcgacaatgtgtttcatcgtgagggaccaacagtgcagcct agagggcccgaggcctcagtttcaagggactaa

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